Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007206.1 Corchorus capsularis cultivar CVL-1 contig07227, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 16644
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30


Found at i:13884 original size:11 final size:10

Alignment explanation


    Indices: 13868--13902  Score: 61
    Period size: 10  Copynumber: 3.4  Consensus size: 10

      13858 AGTTATATCG

                       
      13868 AAAAATATAAA
          1 AAAAATA-AAA

                      
      13879 AAAAATAAAA
          1 AAAAATAAAA

                      
      13889 AAAAATAAAA
          1 AAAAATAAAA

                
      13899 AAAA
          1 AAAA

      13903 TTTCGACCAT


Statistics
Matches: 24,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  10   17  0.71
  11    7  0.29

ACGTcount: A:0.89, C:0.00, G:0.00, T:0.11


Consensus pattern (10 bp):   
AAAAATAAAA

Found at i:13886 original size:9 final size:9

Alignment explanation


    Indices: 13868--13903  Score: 54
    Period size: 9  Copynumber: 3.9  Consensus size: 9

      13858 AGTTATATCG

                 *   
      13868 AAAAATATA
          1 AAAAAAATA

                      
      13877 AAAAAAATAA
          1 AAAAAAAT-A

                     
      13887 AAAAAAATA
          1 AAAAAAATA

                    
      13896 AAAAAAAT
          1 AAAAAAAT

      13904 TTCGACCATA


Statistics
Matches: 25,  Mismatches: 1, Indels: 2
        0.89            0.04        0.07

Matches are distributed among these distances:
   9   16  0.64
  10    9  0.36

ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14


Consensus pattern (9 bp):   
AAAAAAATA
Done.