Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007207.1 Corchorus capsularis cultivar CVL-1 contig07228, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41687

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2490--2620
31
4.2
31
78
0
136
34
24
22
18
1.96
9355--9386
11
3.1
11
86
13
50
9
9
34
46
1.68
11466--11509
15
2.9
15
80
13
54
50
0
45
4
1.22
11925--11959
8
4.1
8
89
10
52
28
2
0
68
1.04
11977--12034
30
1.9
31
89
3
91
43
12
10
34
1.76
14731--14756
12
2.2
12
100
0
52
0
19
0
80
0.71
17103--17135
16
2.1
16
100
0
66
45
12
24
18
1.83
22141--22178
19
2.0
19
94
0
67
15
18
23
42
1.89
36443--36507
31
2.1
31
97
0
121
41
1
3
53
1.25
38777--38863
15
5.7
15
77
12
88
5
13
40
40
1.69
38779--38863
31
2.8
31
83
5
102
5
12
40
41
1.68
38777--38881
47
2.2
47
88
3
149
5
15
40
38
1.71
39660--39699
10
3.6
11
86
10
55
0
20
52
27
1.46
39660--39699
6
7.2
6
83
16
50
0
20
52
27
1.46
39667--39697
16
2.0
15
93
6
53
0
19
58
22
1.40
39707--39744
16
2.4
16
95
0
67
13
13
34
39
1.83
39786--39838
6
9.3
6
76
19
60
1
16
49
32
1.57
39788--39836
16
3.0
16
90
3
80
2
18
53
26
1.56
41246--41283
19
2.0
20
94
5
69
68
10
15
5
1.36
41633--41686
2
27.0
2
100
0
108
50
0
50
0
1.00

Tables:   1

The End!