Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007209.1 Corchorus capsularis cultivar CVL-1 contig07230, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59221

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3597--3639
21
2.0
21
100
0
86
58
18
4
18
1.56
4324--4372
24
2.0
25
84
4
64
36
2
8
53
1.43
8763--8865
55
1.9
53
84
7
136
40
19
11
28
1.86
11468--11508
20
2.0
20
90
9
66
43
21
21
12
1.85
12289--12321
2
17.0
2
87
6
50
48
3
0
48
1.17
12314--12374
28
2.1
28
85
8
79
54
4
11
29
1.57
15435--15800
54
6.8
54
81
1
403
33
27
16
22
1.95
15519--15812
162
1.8
161
90
0
471
33
27
17
22
1.96
15790--15903
54
2.1
55
85
4
160
28
23
16
30
1.96
16875--16904
6
4.8
6
92
8
51
0
0
16
83
0.65
16875--16904
13
2.4
12
94
5
51
0
0
16
83
0.65
23856--23903
13
3.6
13
73
15
53
12
25
0
62
1.30
23859--23931
27
2.6
28
83
10
80
15
23
0
61
1.33
23977--24116
21
6.5
21
81
8
165
20
19
4
55
1.59
24089--24243
53
2.9
51
79
14
161
20
19
3
57
1.54
24106--24299
28
7.1
27
80
13
193
20
19
3
56
1.55
24284--24328
21
2.1
21
83
0
54
26
22
2
48
1.62
24311--24524
7
29.7
7
69
16
91
21
22
2
54
1.56
24290--24557
36
7.5
36
89
2
380
20
22
2
53
1.59
24589--24662
38
1.9
38
83
5
96
21
24
4
50
1.66
24650--24918
32
8.1
32
79
12
206
20
24
3
51
1.63
24626--24763
72
1.9
72
83
2
179
21
25
3
50
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24704--24918
64
3.4
64
83
5
276
19
25
4
51
1.65
24704--24918
96
2.2
96
83
5
267
19
25
4
51
1.65
24840--24893
17
3.3
17
70
19
60
16
27
5
50
1.68
24957--25029
38
1.9
38
94
0
128
28
17
5
47
1.70
27783--27830
23
2.1
23
96
0
87
47
10
0
41
1.37
27890--27987
28
3.5
28
80
5
92
43
26
13
16
1.84
27926--27987
27
2.2
28
83
8
74
46
30
9
12
1.74
28091--28140
25
2.0
25
84
11
66
50
14
12
24
1.76
28572--28618
21
2.2
21
84
0
58
8
31
14
44
1.76
29875--29910
6
6.0
6
90
0
54
86
11
0
2
0.68
30582--30670
24
3.6
24
73
11
72
65
2
11
21
1.36
30721--30777
17
3.4
17
87
0
78
50
7
12
29
1.66
30755--30844
27
3.3
27
69
18
78
61
2
11
25
1.41
30763--30847
18
4.7
18
72
21
70
62
1
10
25
1.35
31437--31469
2
16.5
2
100
0
66
51
0
0
48
1.00
32902--32952
25
2.0
25
84
0
66
25
11
27
35
1.91
33328--33411
27
3.1
27
74
6
89
20
27
27
25
1.99
33284--33411
54
2.4
54
84
2
150
21
27
27
23
1.99
36212--36275
33
1.9
33
83
0
83
21
10
23
43
1.84
36686--36748
30
2.1
30
88
5
92
30
15
33
20
1.94
37357--37443
43
2.0
43
100
0
174
32
11
13
42
1.80
37901--37956
27
2.1
27
93
0
94
17
39
21
21
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43813--43840
2
14.0
2
100
0
56
50
0
0
50
1.00
52798--52861
21
2.9
23
77
17
64
48
14
10
26
1.76
52792--52861
24
3.0
23
76
19
67
48
14
11
25
1.77
53094--53123
6
5.0
6
100
0
60
66
16
0
16
1.25

Tables:   1

The End!