Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007210.1 Corchorus capsularis cultivar CVL-1 contig07231, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120940

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7078--7115
12
3.2
12
88
7
51
7
18
0
73
1.06
9623--9658
19
1.9
18
88
5
54
41
2
22
33
1.68
17623--17669
24
2.0
24
83
8
60
14
14
4
65
1.41
21285--21705
50
8.4
50
89
0
608
23
28
11
36
1.90
21521--21601
23
3.3
23
65
18
65
20
29
11
38
1.88
21882--22395
64
8.0
64
83
2
530
27
24
14
34
1.94
24116--24246
44
2.9
45
82
6
158
9
20
11
58
1.59
24123--24246
46
2.8
44
83
2
149
9
20
12
57
1.63
27629--27668
17
2.4
17
86
0
53
77
20
2
0
0.88
28533--28576
11
4.2
11
91
5
65
9
15
0
75
1.05
28541--28582
11
3.6
12
87
12
61
7
16
0
76
1.00
28533--28566
9
3.6
9
85
14
50
8
17
0
73
1.08
28543--28591
11
4.2
12
84
10
50
6
18
0
75
1.00
40184--40265
22
3.8
21
74
17
78
20
45
24
9
1.81
40207--40292
23
3.9
24
71
17
80
22
44
23
10
1.83
40192--40277
45
1.9
44
92
2
145
20
46
23
9
1.79
42494--42563
16
4.4
15
75
13
52
31
34
20
14
1.92
42480--42524
23
2.0
22
83
16
56
33
35
20
11
1.88
42481--42563
32
2.6
32
80
3
96
31
34
20
13
1.91
44969--45017
21
2.3
21
89
0
71
8
32
28
30
1.86
48340--48409
22
3.2
22
80
8
79
50
7
15
27
1.70
48463--48525
22
2.8
23
80
4
67
39
7
9
42
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51166--51262
33
2.9
33
83
3
115
9
25
43
21
1.82
51166--51301
33
4.1
33
80
3
114
11
25
41
22
1.86
60732--60759
13
2.2
13
100
0
56
14
7
14
64
1.48
62777--62845
16
4.3
16
74
7
59
50
31
10
7
1.63
63755--63783
15
2.0
15
93
6
51
44
0
6
48
1.29
64411--64465
16
3.4
16
82
0
74
50
32
12
3
1.58
64614--64673
15
3.9
15
72
8
57
40
31
6
21
1.79
64613--64713
31
3.2
32
84
4
125
42
33
5
17
1.74
64613--64758
31
4.6
31
75
9
118
43
34
6
16
1.73
72618--72664
22
2.1
22
100
0
94
44
21
6
27
1.76
74218--74258
3
13.7
3
94
0
73
0
0
63
36
0.95
74342--74372
6
5.2
6
100
0
62
67
0
32
0
0.91
76029--76057
15
1.9
15
100
0
58
55
0
3
41
1.17
76950--77008
16
3.7
15
80
10
64
44
38
11
5
1.63
88118--88150
17
1.9
17
93
0
57
60
27
0
12
1.32
105169--105217
23
2.1
23
92
0
80
48
10
6
34
1.62
105842--105901
21
2.9
21
76
0
75
36
11
20
31
1.88
115044--115092
25
2.0
24
88
4
71
32
30
0
36
1.58
115376--115420
18
2.5
18
100
0
90
22
17
0
60
1.37
116368--116403
16
2.3
16
90
4
56
22
5
13
58
1.56
117005--117030
2
13.0
2
100
0
52
50
0
0
50
1.00
120575--120605
2
15.5
2
100
0
62
51
0
0
48
1.00

Tables:   1

The End!