genome.fa.s7212.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007212.1 Corchorus capsularis cultivar CVL-1 contig07233, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121830

Tables:   1   

This is table  1  of  1  ( 85 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
458--548	18	5.1	18	89	0	110	25	41	21	10	1.86
2770--2901	66	2.0	66	98	0	255	25	15	17	42	1.88
12475--12499	6	4.2	6	100	0	50	32	0	52	16	1.44
12938--12970	17	1.9	17	93	0	57	36	15	3	45	1.61
13797--14323	269	2.0	269	94	0	930	45	8	11	34	1.70
21716--21755	20	2.0	20	95	0	71	30	57	0	12	1.36
22513--22577	16	4.1	15	78	9	67	36	33	9	20	1.84
22496--22573	32	2.4	32	91	0	120	38	35	8	16	1.80
22639--22706	32	2.1	32	94	0	118	47	26	7	19	1.75
23220--23314	39	2.5	39	91	1	156	23	21	28	27	1.99
23678--23712	5	7.0	5	100	0	70	80	0	20	0	0.72
25252--25278	2	13.5	2	100	0	54	48	0	0	51	1.00
26296--26337	19	2.2	19	95	0	75	76	0	7	16	1.00
33411--33446	19	1.9	19	88	5	56	19	33	5	41	1.75
42968--42998	6	5.3	6	96	3	55	51	12	0	35	1.40
44341--44379	19	2.1	19	90	4	62	30	20	2	46	1.64
44362--44391	11	2.7	11	94	0	51	40	20	0	40	1.52
44332--44391	22	2.9	22	76	19	65	35	18	3	43	1.67
45675--45712	19	2.1	18	90	5	58	39	21	0	39	1.53
55955--56027	31	2.4	31	79	2	76	28	17	20	32	1.96
57251--57304	23	2.3	23	85	14	76	31	1	0	66	1.02
58305--58988	35	19.8	34	80	9	623	32	19	9	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58541--58597	16	3.4	16	68	13	51	31	26	8	33	1.87
58305--58983	106	6.5	104	82	9	680	32	19	9	38	1.85
58834--58886	15	3.5	15	70	14	54	32	22	11	33	1.90
59508--59573	33	2.0	33	85	5	89	46	7	3	42	1.47
59514--59671	51	2.9	55	84	6	155	43	14	3	39	1.62
62709--62743	9	3.9	9	84	0	52	25	0	0	74	0.82
70696--70777	43	1.9	43	82	9	105	34	17	7	41	1.77
70875--70952	35	2.2	35	84	4	95	38	17	6	37	1.76
70905--71282	56	6.9	56	91	3	576	38	18	5	37	1.75
70973--71060	27	3.2	27	65	15	72	38	18	7	35	1.80
71051--71249	21	10.5	21	66	21	98	39	18	4	37	1.71
71061--71234	35	4.8	35	71	14	136	38	16	5	39	1.71
71196--71276	27	3.2	27	70	20	93	41	18	7	32	1.78
71264--71298	16	2.2	16	90	5	54	42	17	0	40	1.49
71277--71336	29	2.1	28	87	3	84	31	15	3	50	1.60
71374--71437	19	3.4	19	70	8	67	28	12	3	56	1.51
71327--71473	38	3.9	38	84	4	192	27	12	5	54	1.60
71346--71490	76	1.9	74	80	5	166	26	11	8	53	1.67
72083--72114	14	2.3	14	100	0	64	34	12	6	46	1.67
72575--72679	33	3.2	33	77	8	106	24	8	20	45	1.79
72628--72713	33	2.6	32	83	7	93	29	9	19	41	1.83
72709--72813	33	3.2	33	90	0	156	30	10	15	43	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73492--73533	6	7.5	6	91	2	54	0	16	2	80	0.81
73492--73541	23	2.3	21	89	6	73	0	20	2	78	0.86
73492--73541	5	9.2	5	85	14	64	0	20	2	78	0.86
76384--76490	46	2.3	46	88	0	151	36	22	14	26	1.93
76434--77200	91	8.6	91	84	6	848	31	26	15	26	1.96
77009--77153	44	3.2	44	63	25	113	28	26	17	26	1.98
77187--77369	85	2.1	86	82	5	210	30	26	16	26	1.97
77187--77369	43	4.3	42	79	2	195	30	26	16	26	1.97
77397--78087	54	12.8	54	89	1	1042	34	22	14	28	1.94
77397--78087	217	3.2	215	89	1	1033	34	22	14	28	1.94
80401--80458	14	4.3	13	79	12	55	39	10	6	43	1.66
80401--80458	28	2.2	26	84	12	73	39	10	6	43	1.66
83102--83179	35	2.2	35	86	4	104	37	17	7	37	1.79
83133--83564	56	7.9	55	89	5	621	37	17	5	38	1.74
83121--83564	111	4.1	112	90	3	674	37	17	6	39	1.74
83121--83562	167	2.7	168	89	5	672	37	17	6	38	1.74
83546--83580	16	2.2	16	90	5	54	42	17	0	40	1.49
83599--83719	38	3.1	39	84	4	156	26	13	5	54	1.61
84287--84318	12	2.8	11	90	9	55	0	18	3	78	0.89
88864--88895	13	2.6	12	95	5	55	31	3	0	65	1.08
88864--88895	6	5.2	6	92	7	55	31	3	0	65	1.08
91115--91152	19	2.1	18	90	5	58	42	2	21	34	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92653--92679	12	2.2	12	100	0	54	33	18	25	22	1.97
93755--93790	3	12.3	3	94	5	65	33	36	0	30	1.58
94157--94202	20	2.3	21	77	11	51	41	15	17	26	1.88
95248--95316	34	2.0	34	100	0	138	39	8	11	40	1.72
96877--96968	43	2.1	44	97	2	177	40	11	21	26	1.88
97196--97230	1	35.0	1	100	0	70	0	0	0	100	0.00
102847--102919	30	2.4	30	90	4	112	19	8	13	58	1.60
102979--103161	95	1.9	95	94	0	321	33	14	15	36	1.87
104126--104170	20	2.3	19	88	11	65	15	8	8	66	1.43
106198--106262	27	2.4	27	94	0	112	24	0	16	58	1.38
107001--107054	17	3.4	16	82	7	65	5	38	1	53	1.35
107007--107052	16	2.8	17	83	9	69	6	36	2	54	1.39
109041--109081	20	2.0	21	85	4	57	19	12	7	60	1.54
112974--113030	14	4.3	13	77	16	55	61	7	1	29	1.32
112974--113030	13	4.3	12	79	16	51	61	7	1	29	1.32
112974--113030	27	2.1	27	83	3	71	61	7	1	29	1.32
116073--116105	11	3.1	11	91	4	50	42	9	18	30	1.81
117133--117173	20	2.0	21	85	4	57	19	12	7	60	1.54
120036--120086	17	3.0	17	88	0	75	7	35	29	27	1.85

Tables:   1

The End!