Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007215.1 Corchorus capsularis cultivar CVL-1 contig07236, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55027

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3256--3289
11
2.9
12
86
8
52
41
17
0
41
1.50
3831--3913
29
2.8
31
76
7
91
37
12
19
31
1.88
8785--8814
6
5.0
6
100
0
60
33
0
16
50
1.46
16942--16978
19
2.0
18
89
5
56
40
8
21
29
1.82
20480--20520
21
2.0
21
85
0
55
34
21
9
34
1.87
24661--24696
6
6.0
6
100
0
72
50
16
0
33
1.46
25541--25566
10
2.6
10
100
0
52
23
7
19
50
1.73
30158--30191
16
2.2
16
89
5
52
58
8
2
29
1.43
31450--31485
19
1.9
18
88
5
54
33
22
2
41
1.68
31649--31687
20
1.9
21
84
5
53
56
2
20
20
1.54
34105--34166
33
1.9
32
90
3
97
22
20
20
35
1.96
34105--34181
33
2.3
33
84
4
93
23
23
19
33
1.97
40119--40151
15
2.2
15
89
10
50
63
6
3
27
1.32
41434--41469
19
1.9
18
88
5
54
33
22
2
41
1.68
41633--41671
20
1.9
21
84
5
53
56
2
20
20
1.54
50851--51666
431
1.9
433
84
5
1110
31
15
12
41
1.84
52691--52725
2
18.0
2
94
5
63
48
0
0
51
1.00
52885--52931
22
2.1
22
96
0
85
25
2
23
48
1.62
52967--53000
17
2.0
18
88
11
54
20
17
5
55
1.62
53005--53036
16
1.9
17
93
6
57
56
3
31
9
1.47
53292--53322
2
15.5
2
93
0
53
48
3
0
48
1.17

Tables:   1

The End!