genome.fa.s7218.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007218.1 Corchorus capsularis cultivar CVL-1 contig07239, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  159756

Tables:   1   

This is table  1  of  1  ( 86 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1493--1735	22	11.1	22	71	10	104	39	16	10	33	1.83
1494--1674	66	2.7	66	81	4	168	39	14	9	35	1.79
1558--1735	44	4.1	43	76	11	146	38	15	11	34	1.83
1846--2008	22	7.4	22	69	13	93	36	13	8	41	1.75
1839--2006	88	1.9	88	83	7	218	35	16	8	39	1.79
1936--2052	44	2.7	43	77	5	117	35	13	11	40	1.80
4983--5022	2	20.0	2	100	0	80	50	0	0	50	1.00
6849--6885	19	2.0	19	94	5	67	21	5	16	56	1.59
8944--8968	5	5.0	5	100	0	50	40	0	0	60	0.97
9415--9472	27	2.1	27	80	0	62	34	13	17	34	1.89
9428--9479	27	1.9	27	88	0	77	30	15	19	34	1.93
9588--9645	27	2.1	27	83	0	71	31	8	20	39	1.83
9393--9742	173	2.0	174	93	0	603	32	14	17	36	1.90
10365--14553	670	6.3	658	76	9	3129	37	15	13	33	1.87
10355--14553	331	12.6	330	77	8	3181	37	15	13	33	1.87
15126--15150	13	1.9	13	100	0	50	44	0	0	56	0.99
15584--15626	21	2.0	23	90	9	72	48	0	20	30	1.50
23858--24023	22	7.6	22	72	8	115	36	14	9	40	1.78
23858--24048	44	4.3	43	70	10	118	36	14	10	38	1.81
23853--23973	43	2.8	45	74	6	113	33	13	7	45	1.71
24112--24224	22	5.0	22	79	5	66	39	15	7	37	1.75
24151--24237	23	3.8	22	83	10	104	39	16	6	37	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24250--24299	21	2.3	21	75	3	55	28	16	10	46	1.78
24542--24584	13	3.4	12	87	9	59	83	2	9	4	0.87
24550--24584	18	2.0	18	88	5	54	85	2	8	2	0.79
24646--24685	7	5.7	7	93	0	62	0	37	5	57	1.21
24646--24685	21	1.9	21	94	0	71	0	37	5	57	1.21
25417--25464	17	2.6	19	80	6	55	6	4	6	83	0.91
25834--25884	20	2.5	20	87	0	75	29	17	11	41	1.85
26242--26378	22	6.4	21	72	20	90	35	18	8	37	1.82
26644--26707	31	2.1	29	85	5	83	46	4	20	28	1.70
27006--27083	41	1.9	40	87	7	113	41	16	14	28	1.87
34344--34368	9	2.8	9	100	0	50	36	8	32	24	1.84
42683--42708	2	13.0	2	100	0	52	50	0	0	50	1.00
43245--43291	24	1.9	24	83	12	60	44	6	8	40	1.60
43895--43943	19	2.7	19	90	6	75	46	10	0	42	1.37
47497--47527	13	2.4	13	100	0	62	87	12	0	0	0.55
48065--48097	16	2.1	16	100	0	66	18	33	18	30	1.94
55140--55170	3	10.3	3	100	0	62	67	0	32	0	0.91
58257--58290	3	11.3	3	100	0	68	67	0	0	32	0.91
67608--67645	8	4.8	8	100	0	76	26	26	34	13	1.93
72378--72436	31	1.9	31	86	13	86	8	18	10	62	1.51
72695--72720	6	4.3	6	100	0	52	84	0	15	0	0.62
72741--72781	15	2.5	17	80	7	50	78	0	17	4	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85517--85553	17	2.2	17	95	0	65	27	13	37	21	1.91
88322--88360	12	3.6	12	74	25	50	25	23	15	35	1.94
88471--88509	10	3.9	10	89	0	60	43	20	5	30	1.73
88471--88509	20	2.0	20	100	0	78	43	20	5	30	1.73
89334--89358	13	1.9	13	100	0	50	88	0	0	12	0.53
89521--89559	12	3.2	12	92	7	69	23	25	15	35	1.94
89521--89558	13	3.0	13	96	3	69	23	23	15	36	1.94
90355--90381	2	13.5	2	100	0	54	48	0	0	51	1.00
93660--93710	14	3.3	15	76	23	52	9	17	17	54	1.69
97636--98706	440	2.5	425	83	6	1341	42	12	14	30	1.82
99041--99100	3	20.0	3	80	13	70	38	1	0	60	1.07
99045--99131	15	5.7	15	80	17	83	41	1	0	57	1.06
99042--99138	8	11.9	8	73	21	62	40	1	1	57	1.12
99044--99139	19	5.1	19	78	17	71	39	1	1	58	1.12
102733--102830	23	4.6	21	70	23	80	24	26	23	25	2.00
102732--102836	32	3.3	32	77	19	139	23	27	23	24	2.00
103061--103093	17	2.0	17	88	5	50	24	3	21	51	1.62
104871--104919	2	24.5	2	91	0	80	44	0	4	51	1.20
106377--106447	36	2.0	36	97	0	133	46	4	16	32	1.67
107297--107339	17	2.6	17	85	7	54	34	2	9	53	1.46
107398--107435	17	2.2	17	95	0	67	34	0	10	55	1.34
109861--110121	131	2.0	131	96	0	486	29	11	16	42	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111836--111887	25	2.0	26	85	7	70	46	11	21	21	1.82
112002--112091	47	1.9	47	86	0	126	41	20	8	30	1.82
112100--112128	12	2.3	13	94	5	51	44	20	13	20	1.85
113321--113479	31	5.5	31	77	17	146	33	28	22	16	1.95
113380--113505	31	4.2	31	85	4	134	33	27	20	18	1.96
113380--113516	61	2.3	59	79	7	143	34	27	21	17	1.95
118295--118329	14	2.4	15	85	9	54	54	2	0	42	1.15
122126--122201	30	2.5	30	100	0	152	44	15	27	11	1.82
123742--124005	124	2.1	124	95	1	478	53	3	9	34	1.48
123866--124156	149	1.9	151	95	1	523	52	4	8	34	1.52
134646--134692	14	3.4	13	83	13	58	36	6	6	51	1.53
139690--139734	21	2.1	21	84	12	56	31	0	2	66	1.04
142468--142501	12	2.8	12	86	0	50	2	20	0	76	0.92
145554--145798	121	2.0	121	100	0	490	44	17	9	28	1.81
147183--147251	33	2.1	33	94	0	120	53	5	17	23	1.65
147803--147835	3	10.7	3	93	6	57	36	0	0	63	0.95
149616--149654	15	2.7	15	92	7	64	35	15	10	38	1.81
150747--150972	105	2.2	104	85	0	308	29	18	17	34	1.94
155933--156093	82	2.0	82	88	2	243	27	15	23	32	1.95
157449--157494	21	2.1	21	84	4	56	39	21	8	30	1.84

Tables:   1

The End!