Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007219.1 Corchorus capsularis cultivar CVL-1 contig07240, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39019

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2646--2681
19
1.9
18
88
5
54
36
22
0
41
1.54
9718--9864
73
2.0
73
98
0
285
36
18
16
28
1.92
14222--14270
21
2.3
21
89
0
71
30
28
32
8
1.86
17125--17173
21
2.3
21
82
6
55
42
14
28
14
1.84
27087--27193
31
3.5
31
71
10
112
34
20
19
25
1.96
27092--27242
60
2.8
53
85
10
184
35
21
19
23
1.96
27271--27469
31
6.6
30
73
13
158
26
18
19
35
1.95
27337--27434
29
3.3
29
66
16
83
29
18
16
35
1.93
27305--27465
60
2.7
60
93
1
270
26
18
18
36
1.94
28551--28622
31
2.4
29
81
9
81
34
15
13
36
1.87
29302--29340
16
2.4
16
82
0
51
58
0
2
38
1.12
30030--30057
12
2.3
12
100
0
56
50
32
17
0
1.47
30395--30431
19
2.0
19
89
5
58
64
0
0
35
0.94
34248--34358
16
6.9
16
72
8
91
34
33
20
11
1.89
34248--34355
48
2.2
48
80
6
130
32
34
21
12
1.90
34835--34917
42
2.0
42
95
0
148
38
18
4
38
1.72
35144--35244
16
6.4
16
78
12
93
33
34
22
8
1.86
35149--35240
32
2.9
32
85
3
114
33
35
20
9
1.86

Tables:   1

The End!