Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000722.1 Corchorus capsularis cultivar CVL-1 contig00722, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6237
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.35


Found at i:3583 original size:15 final size:15

Alignment explanation


    Indices: 3559--3589  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       3549 GGCCCAAAGG

                           
       3559 CTAAAACTCTCCCAA
          1 CTAAAACTCTCCCAA

                 *         
       3574 CTAAAGCTCTCCCAA
          1 CTAAAACTCTCCCAA

             
       3589 C
          1 C

       3590 AAATATAATT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.35, C:0.42, G:0.03, T:0.19


Consensus pattern (15 bp):   
CTAAAACTCTCCCAA

Found at i:6194 original size:2 final size:2

Alignment explanation


    Indices: 6187--6231  Score: 81
    Period size: 2  Copynumber: 22.5  Consensus size: 2

       6177 TATTTTCTCT

                                        *                                 
       6187 TA TA TA TA TA TA TA TA TA TT TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA

                
       6229 TA T
          1 TA T

       6232 TTCCCT


Statistics
Matches: 41,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   2   41  1.00

ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53


Consensus pattern (2 bp):   
TA

Done.