Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007221.1 Corchorus capsularis cultivar CVL-1 contig07242, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35078

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2971--3035
33
2.0
33
84
0
85
50
7
10
30
1.65
3323--3361
6
6.5
6
100
0
78
53
15
0
30
1.42
13085--13336
137
1.8
137
100
0
504
29
16
12
41
1.85
15689--15713
10
2.5
10
100
0
50
24
8
20
48
1.76
17243--17289
23
2.0
24
83
8
60
57
19
2
21
1.51
22580--22604
10
2.5
10
100
0
50
24
8
20
48
1.76
23006--23097
40
2.3
40
96
0
166
34
25
5
34
1.79
24579--24752
51
3.4
51
82
4
217
36
8
16
39
1.78
24579--24767
102
1.9
102
84
6
258
35
7
17
38
1.79
25572--25824
46
5.7
44
76
14
209
15
26
20
37
1.92
25748--25862
40
2.9
40
92
2
178
13
28
20
36
1.92
25921--26788
50
17.6
49
81
6
541
20
27
17
35
1.94
25916--26725
98
8.2
98
81
6
542
20
27
16
35
1.94
25916--26337
147
2.9
147
81
4
453
22
28
16
31
1.96
26203--26840
50
12.8
50
84
3
736
18
26
16
38
1.92
26259--26840
201
2.9
198
88
4
807
17
26
17
38
1.92
34159--34183
9
2.8
9
100
0
50
80
12
8
0
0.92

Tables:   1

The End!