Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007224.1 Corchorus capsularis cultivar CVL-1 contig07245, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66419

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18669--18706
20
1.9
20
88
0
58
47
5
7
39
1.55
25913--25956
3
14.7
3
95
0
79
65
0
2
31
1.05
39179--39326
22
6.8
22
66
7
68
33
12
10
43
1.75
39431--39716
22
13.1
22
70
13
110
37
13
9
39
1.78
39483--39569
25
3.7
23
79
7
86
37
13
6
41
1.72
39476--39546
25
2.9
25
83
4
92
38
16
7
38
1.76
39614--39737
44
2.8
44
77
12
132
34
11
11
42
1.76
39841--39946
22
4.8
22
72
9
81
33
16
9
40
1.80
39839--39965
22
5.8
22
68
16
66
33
15
10
40
1.81
39904--40015
44
2.5
46
77
12
124
36
15
11
36
1.83
40224--40284
31
2.0
31
86
0
86
49
4
16
29
1.66
40526--40589
31
2.1
31
85
5
87
46
4
18
29
1.69
63860--63964
43
2.4
45
79
3
115
37
11
13
38
1.81
65133--65167
3
12.0
3
87
6
54
65
2
0
31
1.07
65498--65541
21
2.1
21
86
0
61
22
27
11
38
1.88
65718--65804
42
2.1
42
100
0
174
37
19
21
20
1.94

Tables:   1

The End!