Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01007227.1 Corchorus capsularis cultivar CVL-1 contig07248, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 7495
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Found at i:444 original size:15 final size:15
Alignment explanation
Indices: 424--455 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
414 TTAGCCAAAA
424 ACCGTGATGGTTAAT
1 ACCGTGATGGTTAAT
439 ACCGTGATGGTTAAT
1 ACCGTGATGGTTAAT
454 AC
1 AC
456 TCGAAAAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (15 bp):
ACCGTGATGGTTAAT
Found at i:1080 original size:324 final size:323
Alignment explanation
Indices: 452--1524 Score: 1692
Period size: 324 Copynumber: 3.3 Consensus size: 323
442 GTGATGGTTA
*
452 ATACTCGAAAAAA-CAAATCCTTATATTCAATATTGCTGAGATTTGGTTCGATGAATATAGATAT
1 ATACTC-AAAAAAGCAAATCCTTATATTCAATATTGCTGAGATTTGCTTCGATGAATATAGATAT
*
516 TTCAAGGAGTTTTTGCGCCAACAAATCATGCAGAATTGAGCCGGGGCTCCAGAATTCGTTTTTAG
65 TTCAAGGAGCTTTTGCGCCAA-AAATCATGCAGAATTGAGCCGGGGCTCCAGAATTCGTTTTTAG
*
581 CCAAAAAACCGTGATGATTAGTACACGATTTTCGGCTAAAAAACTGACCCGAAAAATTTTCTCTC
129 CC-AAAAACCGTGATGGTTAGTACACGA-TTTCGGCTAAAAAACTGACCCGAAAAATTTTCTCTC
* *
646 AATTTTTTGCCATAGTACAAAGAAAAAAAATATAATTCAAATCCAAAAAGATTGAGGGCTTTTCA
192 AATTTTTTGCCACAATACAAAGAAAAAAAATATAATTCAAATCCAAAAAGATTGAGGGCTTTTCA
*
711 CGCTTCAAATATTGTTTTTCG--TTTTTTTCCGAATTAATTTCTAATTAAATCGAAACATGATTG
257 CGCTTCAAATATTGTTTTTCGTTTTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTG
774 AG
322 AG
*
776 ATACTCAAAAAAGCAAATCCTTATATTCAATATTGCTGAGATTTGCTTCGATGATTATAGATATT
1 ATACTCAAAAAAGCAAATCCTTATATTCAATATTGCTGAGATTTGCTTCGATGAATATAGATATT
*
841 TCAAGGAGCTTTTGCGCCAAAAATCATGCAGAATTGAGCCGGGGCTCCAGAACTCGTTTTTAGCC
66 TCAAGGAGCTTTTGCGCCAAAAATCATGCAGAATTGAGCCGGGGCTCCAGAATTCGTTTTTAGCC
* * *
906 AAAAACCGTGATGGTTAGTACACGATTTCAGCTAAAAAACTGACCCGAAAAATTTTCTCTTAAGT
131 AAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAAACTGACCCGAAAAATTTTCTCTCAATT
*
971 TTTTGCCACAATACAAAGAAAAAAAATATAATTCAACTCCAAAAAGATTGAGGGCTTTTCACGCT
196 TTTTGCCACAATACAAAGAAAAAAAATATAATTCAAATCCAAAAAGATTGAGGGCTTTTCACGCT
* * * *
1036 TGAAATATCGTTTTTGAGTTTTTTTTTCCAAATTAATTTCTAATTAAATCGAAACAAGATTGAG
261 TCAAATATTGTTTTT-CGTTTTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAG
** * * *
1100 ATACTTGAAAAACCAAATCCTTATATTCAATATT-CTTGAGATTTGGTTCGATGAATATAAATAT
1 ATACTCAAAAAAGCAAATCCTTATATTCAATATTGC-TGAGATTTGCTTCGATGAATATAGATAT
* * * * * *
1164 TTTAGGGAG-TCTTTGCACCAAAAATCATGCAGAATTCA-CTAGGGGCTCCAGAATTCGTTTTCA
65 TTCAAGGAGCT-TTTGCGCCAAAAATCATGCAGAATTGAGC-CGGGGCTCCAGAATTCGTTTTTA
* *
1227 GCCAGAAACCGTGATGGTTATTACACGATTTCGGCTAAAAAACTGACCCGAAAAATTTTCTCTCA
128 GCCAAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAAACTGACCCGAAAAATTTTCTCTCA
* *
1292 ATTTTTTGCTACAATACAAAGAACAAAAATATAATTCAAATCCAAAAAGATTGAGGGCTTTTCAC
193 ATTTTTTGCCACAATACAAAGAAAAAAAATATAATTCAAATCCAAAAAGATTGAGGGCTTTTCAC
* *
1357 GCTTCACATATTGTTTTTCGTTTTTTTTTCCGAATTAATTTCTAATTAAATTGAAACAAGATTGA
258 GCTTCAAATATTGTTTTTCGTTTTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGA
1422 G
323 G
* * *
1423 ATACTTGAAAAAAG-AAATCCTTATATTCAATATTGTTGAGATTTGCTTCGATGATTATAGATAT
1 ATAC-TCAAAAAAGCAAATCCTTATATTCAATATTGCTGAGATTTGCTTCGATGAATATAGATAT
1487 TTCAAGGAGCTTTTGCGCCAAAAATCATGCAGAATTGA
65 TTCAAGGAGCTTTTGCGCCAAAAATCATGCAGAATTGA
1525 TGACCGGTCA
Statistics
Matches: 685, Mismatches: 54, Indels: 21
0.90 0.07 0.03
Matches are distributed among these distances:
321 112 0.16
322 25 0.04
323 179 0.26
324 369 0.54
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.33
Consensus pattern (323 bp):
ATACTCAAAAAAGCAAATCCTTATATTCAATATTGCTGAGATTTGCTTCGATGAATATAGATATT
TCAAGGAGCTTTTGCGCCAAAAATCATGCAGAATTGAGCCGGGGCTCCAGAATTCGTTTTTAGCC
AAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAAACTGACCCGAAAAATTTTCTCTCAATT
TTTTGCCACAATACAAAGAAAAAAAATATAATTCAAATCCAAAAAGATTGAGGGCTTTTCACGCT
TCAAATATTGTTTTTCGTTTTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAG
Found at i:5196 original size:321 final size:321
Alignment explanation
Indices: 3423--7495 Score: 5520
Period size: 321 Copynumber: 12.7 Consensus size: 321
3413 AAATGACCAT
3423 AAATATCGTTTGTCGTTTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATACT
1 AAATATCGTTTGTCGTTTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATACT
* * *
3488 CGAAAAAATAAATCCTTATATTCAATATTGCTGAGATTTACTTCGATGATTATAAATATTTCAAG
66 CGAAAAAACAAATCCTTATATTCAATATTGCTGAGATTTGCTTCGATGATTATAGATATTTCAAG
* *
3553 GAGTTTTTGCGCCAAAAATCATGCAGAATTGAGCCGGGGTTCAAGAATTCGTTTTTAGCCAAAAA
131 GAGTTTTTGCGCCAAAAATCATGCAGAATTGAGCCGGGGCTCCAGAATTCGTTTTTAGCCAAAAA
* * * *
3618 CCGTGATGGTTAGAACGCGATTACGGCTAGAAAACTGACCCGAAAAATTTTCTCTCAATTTTTTT
196 CCGTGATGGTTAGTACACGATTTCGGCTAAAAAACTGACCCGAAAAATTTTCTCTCAA-TTTTTT
3683 GCCACAATACAAAGAAAAAAAATATAATTCAACTCCAAAAAGATTGAGGGCTTTTCACGCTTC
260 GCCACAATACAAAG-AAAAAAATATAATTCAACTCCAAAAAGATTGAGGGCTTTTCACGCTTC
* ** *
3746 AAATTTCGTTTTTGTTTTTTTTTTTCCAAATTAATTTCTAATTAAATCGAAACAAGATTGAGATA
1 AAATATCG--TTTGTCGTTTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATA
* * *
3811 CTCGAAAACACAAATCCTTATATTCAATATTGCTGAGATTTGGTTCGATGAATATAGATATTTCA
64 CTCGAAAAAACAAATCCTTATATTCAATATTGCTGAGATTTGCTTCGATGATTATAGATATTTCA
* * * * *
3876 AGGACTATTCGCACCAAAAATCATGCAGAATTGAGCCGGGGCTCCAGAATTCGTTTTTTG-CAAG
129 AGGAGTTTTTGCGCCAAAAATCATGCAGAATTGAGCCGGGGCTCCAGAATTCGTTTTTAGCCAA-
* * *
3940 AAACCGTGATGATTAGTACACAATTTCGGCTAAAAAACTGAACCGAAAAATTTTCTCTCAATTTT
193 AAACCGTGATGGTTAGTACACGATTTCGGCTAAAAAACTGACCCGAAAAATTTTCTCTCAATTTT
*
4005 TTGCCACAATACAAAGAAAAAAATATATAATTCAACTCCAAAAAGATTGAGGG-GTTTCACGCTT
258 TTGCCACAATACAAAG-AAAAAA-ATATAATTCAACTCCAAAAAGATTGAGGGCTTTTCACGCTT
4069 C
321 C
*
4070 AAATATCGTTT-TCATTTTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATAC
1 AAATATCGTTTGTC-GTTTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATAC
* * * * *
4134 TCGAAAAAACAAATACTTATATTCAATATTGCTGAGATTTGGTTCGAAGAATACAGATATTTCAA
65 TCGAAAAAACAAATCCTTATATTCAATATTGCTGAGATTTGCTTCGATGATTATAGATATTTCAA
** * * * * *
4199 GGAGACTTTGCACAAAAAATCATGCAGAACTGACCCGGGGCTCCAGAATTCGTTTTTAGCCAGAA
130 GGAGTTTTTGCGCCAAAAATCATGCAGAATTGAGCCGGGGCTCCAGAATTCGTTTTTAGCCAAAA
* * * *
4264 ACCGTGTTGGTTAGTACACGATTTTGACTAAAAAGCTGACCCGAAAAATTTTCTCTCAATTTTTT
195 ACCGTGATGGTTAGTACACGATTTCGGCTAAAAAACTGACCCGAAAAATTTTCTCTCAATTTTTT
* ** * * *
4329 GCCAAAATACAAAGAAAAAAAAATATAGCTCAAATCCAAAAAGATTGAGAGCTTTTCACGTTTC
260 GCCACAATACAAAG--AAAAAAATATAATTCAACTCCAAAAAGATTGAGGGCTTTTCACGCTTC
*
4393 AAATATCGTTT-TCGTTTTTTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATA
1 AAATATCGTTTGTCG--TTTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATA
* * *
4457 CTCGAAAAAACAAATCCTTATATGCAATATTGCTGAGATTTGCTTCGATGATTATAGGTATTTTA
64 CTCGAAAAAACAAATCCTTATATTCAATATTGCTGAGATTTGCTTCGATGATTATAGATATTTCA
* * * * * *
4522 AGGAGCTTTTGCGCCAAAAATCACGTAGAATTGAGCCGAGGCTCTAGATTTCGTTTTTAGCCAAA
129 AGGAGTTTTTGCGCCAAAAATCATGCAGAATTGAGCCGGGGCTCCAGAATTCGTTTTTAGCCAAA
* *
4587 AACCGTGATGGTTAGTACAC-ACTTTCAGCTAAAAAACTGACCCGAAAAATTTTCTATCAATTTT
194 AACCGTGATGGTTAGTACACGA-TTTCGGCTAAAAAACTGACCCGAAAAATTTTCTCTCAATTTT
* * **
4651 TTGCCACAATACAAAGAAAAAATATATAATTAAAATCCAAAAAGATTGAGGGCTTTTCACGCTAG
258 TTGCCACAATACAAAGAAAAAA-ATATAATTCAACTCCAAAAAGATTGAGGGCTTTTCACGCTTC
* * *
4716 AAATATCGTTTTTCGTTTTCTTTTTCCAAATTAATTTCTATTTAAATCGAAACAAGATTGAGATA
1 AAATATCGTTTGTCG-TTT-TTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATA
* * * * * * *
4781 CTTGAAAAACCAAATCTTTATATTCAATATTGCTGAGATTTGGTTTGATGAATATAAATATATT-
64 CTCGAAAAAACAAATCCTTATATTCAATATTGCTGAGATTTGCTTCGATGATTATAGATAT-TTC
* * * * * *
4845 AAGGAGTCTTTGCACCAAAAATCTTGCAGAATTCA-CTAGGGGCTCCAGAATTCGTTTTCAGCCA
128 AAGGAGTTTTTGCGCCAAAAATCATGCAGAATTGAGC-CGGGGCTCCAGAATTCGTTTTTAGCCA
* *
4909 GAAACCGTGATGGTTATTACACGATTTCGGCTAAAAAACTGACCCGAAAAATTTTCTCTCAATTT
192 AAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAAACTGACCCGAAAAATTTTCTCTCAATTT
* *
4974 TTTGCCACAATACAAAGAAAAAAATATAATTCAACTCCAAAAATATTGAGGACTTTTCACGCTTC
257 TTTGCCACAATACAAAGAAAAAAATATAATTCAACTCCAAAAAGATTGAGGGCTTTTCACGCTTC
*
5039 AAATATCGTTTGTC-ATTTTTTTCCAGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATAC
1 AAATATCGTTTGTCGTTTTTTTTCC-GAATTAATTTCTAATTAAATCGAAACAAGATTGAGATAC
5103 TCGAAAAAACAAATCCTTATATTCAATATTGCTGAGATTTGCTTCGATGATTATAGATATTTCAA
65 TCGAAAAAACAAATCCTTATATTCAATATTGCTGAGATTTGCTTCGATGATTATAGATATTTCAA
* * * *
5168 GGAGTTTTTGCGCCAAAAATCATGCAGAATTGAGCCGGCGTTCAAGAATTTGTTTTTAGCCAAAA
130 GGAGTTTTTGCGCCAAAAATCATGCAGAATTGAGCCGGGGCTCCAGAATTCGTTTTTAGCCAAAA
*
5233 ACCGTGATGGTTAGTACACGATTTCGGCTAAAAAACTGACACGAAAAATTTTCTCTCAATTTTTT
195 ACCGTGATGGTTAGTACACGATTTCGGCTAAAAAACTGACCCGAAAAATTTTCTCTCAATTTTTT
* * *
5298 GCCGCAATACAAA-AAGAAAATATAATTCAACTCCAAAAAGATTGAGGCCTTTTCACGCTTC
260 GCCACAATACAAAGAAAAAAATATAATTCAACTCCAAAAAGATTGAGGGCTTTTCACGCTTC
* *
5359 AAATATCGTTTGTCGTTTTTTATTCCGAATTAATTTCTAACTAAATCGAAACAAGATTGTGATAC
1 AAATATCGTTTGTCGTTTTTT-TTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATAC
5424 TCGAAAAAACAAATCCTTATATTCAATATTGCTGAGATTTGCTTCGATGATTATAGATATTTCAA
65 TCGAAAAAACAAATCCTTATATTCAATATTGCTGAGATTTGCTTCGATGATTATAGATATTTCAA
* * * * *
5489 GGAGTTTTTGCGCCAAAAATCATACAGAATTGAGCCGGGGTTCAAGAATTTGCTTTTAGCCAAAA
130 GGAGTTTTTGCGCCAAAAATCATGCAGAATTGAGCCGGGGCTCCAGAATTCGTTTTTAGCCAAAA
* *
5554 ACCGTTATGGTTAGTACACGATTTCAGCTAAAAAACTGACCCGAAAAATTTTCTCTCAATTTTTT
195 ACCGTGATGGTTAGTACACGATTTCGGCTAAAAAACTGACCCGAAAAATTTTCTCTCAATTTTTT
5619 GCCACAATACAAAGAAAAAAATATATAATTCAACTCCAAAAAGATTGAGGGCTTTTCACGCTTC
260 GCCACAATACAAAG-AAAAAA-ATATAATTCAACTCCAAAAAGATTGAGGGCTTTTCACGCTTC
* * *
5683 AAATATCGTTTTTCGTTTTTTTTCCAAATTAATTTCTAATTAAATCGAAACAAGATTGAGATATT
1 AAATATCGTTTGTCGTTTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATACT
* *
5748 CGAAAAAACAAATCCTTATATTCAATATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAG
66 CGAAAAAACAAATCCTTATATTCAATATTGCTGAGATTTGCTTCGATGATTATAGATATTTCAAG
* * * * *
5813 GAGTCTTTT-CACCAAAAATCATACAAAATTGAGTCGGGGCTCCAGAATTCGTTTTTAGCCAGAA
131 GAGT-TTTTGCGCCAAAAATCATGCAGAATTGAGCCGGGGCTCCAGAATTCGTTTTTAGCCAAAA
* ** * ** * *
5877 ACCGTGA----T-G-AC-C-----C-G---AAAAATTTTCTC-TCAATTTTTAC-CACAA-----
195 ACCGTGATGGTTAGTACACGATTTCGGCTAAAAAACTGACCCGAAAAATTTT-CTCTCAATTTTT
* * * *
5919 T---ACAA-AGAAAAAAAAATATATAATTCAACTCCAAAAAGATTGAGGGCTTTTCACGCTTG
259 TGCCACAATACAAAGAAAAAAATATAATTCAACTCCAAAAAGATTGAGGGCTTTTCACGCTTC
* * * *
5978 AAATATCGTTTTTGGTTTTTTTTTCCAAATTAATTTCTAATTAAATCCAAACAAGATTGAGATAC
1 AAATATCGTTTGTCG-TTTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATAC
* * * ** * ** * *
6043 TTGAAAAACCAAAACCTTATATTCAATATTTTTGAGATTTGGTTCGATGAACATAAATATTTTAA
65 TCGAAAAAACAAATCCTTATATTCAATATTGCTGAGATTTGCTTCGATGATTATAGATATTTCAA
* * * * ** *
6108 AGAGTCTTTGCACCAAAAATCATGAAGAATTGAGTAGGGGCTCCAGAATTTGTTTTTAGCCAAAA
130 GGAGTTTTTGCGCCAAAAATCATGCAGAATTGAGCCGGGGCTCCAGAATTCGTTTTTAGCCAAAA
*
6173 ACCGTGATGGTTAGTACACGATTTCAGCTAAAAAACTGACCCGAAAAATTTTCTCTCAATTTTTT
195 ACCGTGATGGTTAGTACACGATTTCGGCTAAAAAACTGACCCGAAAAATTTTCTCTCAATTTTTT
* * *
6238 GCCACAATACAAAGAAAAAAATATAATTGAACTCCAAAAAGGTTGAGGACTTTTCACGCTTC
260 GCCACAATACAAAGAAAAAAATATAATTCAACTCCAAAAAGATTGAGGGCTTTTCACGCTTC
*
6300 AAATATCGTTTGTCGTTTTTTTTCCGAATTAATTTCTAATTAAATC-AAATCAAGATTGAGATTC
1 AAATATCGTTTGTCGTTTTTTTTCCGAATTAATTTCTAATTAAATCGAAA-CAAGATTGAGATAC
6364 TCGAAAAAACAAATCCTTATATTCAATATTGCTGAGATTTGCTTCGATGATTATAGATATTTCAA
65 TCGAAAAAACAAATCCTTATATTCAATATTGCTGAGATTTGCTTCGATGATTATAGATATTTCAA
* * *
6429 GGACTTTTTGCGCCAAAAATCATGCAGAATTGAGCCGGGGTTCAAGAATTCGTTTTTAGCCAAAA
130 GGAGTTTTTGCGCCAAAAATCATGCAGAATTGAGCCGGGGCTCCAGAATTCGTTTTTAGCCAAAA
* *
6494 ACCGTGAT-G---GTACATGATTTTGGCTAAAAAACTGACCCGAAAAATTTTCTCTCAATTTTTT
195 ACCGTGATGGTTAGTACACGATTTCGGCTAAAAAACTGACCCGAAAAATTTTCTCTCAATTTTTT
*
6555 GCCACAATACAAA-AAAATATATATAATTCAACTCCAAAAAGATTGAGGGCTTTTCACGCTTC
260 GCCACAATACAAAGAAAA-AAATATAATTCAACTCCAAAAAGATTGAGGGCTTTTCACGCTTC
* *
6617 AAATATCGTTTGTCGTTTTTTTTCCGAATTAATTTCAAACTAAATCGAAACAAGATTGAGATACT
1 AAATATCGTTTGTCGTTTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATACT
* *
6682 CGAAAAAACAAATCCTTATATTCAATATTGCTGAGATTTTCTTCGATGATTATATATATATATTT
66 CGAAAAAACAAATCCTTATATTCAATATTGCTGAGATTTGCTTCGATG---AT-TATAGATATTT
* * * * *
6747 CAAGGAGTTTTTGCGCCAAAAATAATGCAGTATTGAGCCGGGGTTCAAGAATTCGTTTTTAGTCA
127 CAAGGAGTTTTTGCGCCAAAAATCATGCAGAATTGAGCCGGGGCTCCAGAATTCGTTTTTAGCCA
* *
6812 AAAACCGTTATGGTTAGTACACGATTTCAGCTAAAAAACTGACCCGAAAAATTTTCTCTCAATTT
192 AAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAAACTGACCCGAAAAATTTTCTCTCAATTT
* * * *
6877 TTTGCCACAATACAAAGAAAAAATTATTAATT-AAATCCAAAAGGATTGAGGCCTTTTCACGCTT
257 TTTGCCACAATACAAAGAAAAAAATA-TAATTCAACTCCAAAAAGATTGAGGGCTTTTCACGCTT
6941 C
321 C
* * * * *
6942 AATTATCATTTTTCGTTTTTTTTTTTCCAAATTAATTTCTAATTAATTCGAAACAAGATTGAGAT
1 AAATATCGTTTGTCG---TTTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGAT
* * * * * * ** **
7007 ACTC-ATAAAAA-AACTCCTTATATCCAATGTGGCTAACATTTGGATCGATGAAAATAGATATTT
63 ACTCGA-AAAAACAAATCCTTATATTCAATATTGCTGAGATTTGCTTCGATGATTATAGATATTT
* ** * * * *
7070 CAAGGTGTCATTGCACCAAAAATCATGCAGAATTGAGTCGGGGTTCCAGATTTCGTTTTTAGCCA
127 CAAGGAGTTTTTGCGCCAAAAATCATGCAGAATTGAGCCGGGGCTCCAGAATTCGTTTTTAGCCA
** * * * *
7135 AAAATTGTGTTGGTTAGTGCACGATTTCGGCTAAAAAACGGACCCGAAAAATTTTCTTTCAATTT
192 AAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAAACTGACCCGAAAAATTTTCTCTCAATTT
* * * * *
7200 TTTGCCAAAATAAAAAGAAAAAATATATAATTCAAATCCAAAAAGATTGAGGGGTTTTCACACTT
257 TTTGCCACAATACAAAGAAAAAA-ATATAATTCAACTCCAAAAAGATTGAGGGCTTTTCACGCTT
7265 C
321 C
* **
7266 AAATATCGTTTTTTAATTTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATAC
1 AAATATCG-TTTGTCGTTTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATAC
** *
7331 TCGAAAAAACAAATCCTTATATTCAATATTGCTGAGATTTGCTTCGATGATTACGGGTATTTCAA
65 TCGAAAAAACAAATCCTTATATTCAATATTGCTGAGATTTGCTTCGATGATTATAGATATTTCAA
* * * * * *
7396 GGAGCTTTTGCGCCAAAAATCACGCAAAATTCAGCCGGGGCCCCAGATTTCGTTTTTAGCCAAAA
130 GGAGTTTTTGCGCCAAAAATCATGCAGAATTGAGCCGGGGCTCCAGAATTCGTTTTTAGCCAAAA
* *
7461 ACCGTGATAGTTAGTACACGATTTCAGCTAAAAAA
195 ACCGTGATGGTTAGTACACGATTTCGGCTAAAAAA
Statistics
Matches: 3316, Mismatches: 356, Indels: 156
0.87 0.09 0.04
Matches are distributed among these distances:
295 58 0.02
296 169 0.05
297 4 0.00
298 4 0.00
300 1 0.00
301 2 0.00
302 2 0.00
303 1 0.00
306 10 0.00
307 9 0.00
308 1 0.00
309 1 0.00
310 1 0.00
311 1 0.00
312 9 0.00
313 10 0.00
316 5 0.00
317 209 0.06
318 5 0.00
319 1 0.00
320 74 0.02
321 711 0.21
322 388 0.12
323 578 0.17
324 608 0.18
325 362 0.11
326 9 0.00
327 31 0.01
328 52 0.02
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.33
Consensus pattern (321 bp):
AAATATCGTTTGTCGTTTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATACT
CGAAAAAACAAATCCTTATATTCAATATTGCTGAGATTTGCTTCGATGATTATAGATATTTCAAG
GAGTTTTTGCGCCAAAAATCATGCAGAATTGAGCCGGGGCTCCAGAATTCGTTTTTAGCCAAAAA
CCGTGATGGTTAGTACACGATTTCGGCTAAAAAACTGACCCGAAAAATTTTCTCTCAATTTTTTG
CCACAATACAAAGAAAAAAATATAATTCAACTCCAAAAAGATTGAGGGCTTTTCACGCTTC
Found at i:5837 original size:323 final size:324
Alignment explanation
Indices: 3423--5885 Score: 3644
Period size: 324 Copynumber: 7.6 Consensus size: 324
3413 AAATGACCAT
*
3423 AAATATCGTTTGTCGTTTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATACT
1 AAATATCGTTTTTCGTTTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATACT
* * * *
3488 CGAAAAAATAAATCCTTATATTCAATATTGCTGAGATTTACTTCGATGATTATAAATATTTCAAG
66 CGAAAAAACAAATCCTTATATTCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAG
* *
3553 GAGT-TTTTGCGCCAAAAATCATGCAGAATTGAGCCGGGGTTCAAGAATTCGTTTTTAGCCAAAA
131 GAGTCTTTTGCGCCAAAAATCATGCAGAATTGAGCCGGGGCTCCAGAATTCGTTTTTAGCCAAAA
* * * *
3617 ACCGTGATGGTTAGAACGCGATTACGGCTAGAAAACTGACCCGAAAAATTTTCTCTCAATTTTTT
196 ACCGTGATGGTTAGTACACGATTTCGGCTAAAAAACTGACCCGAAAAATTTTCTCTCAA-TTTTT
3682 TGCCACAATACAAAGAAAAAAA-ATATAATTCAACTCCAAAAAGATTGAGGGCTTTTCACGCTTC
260 TGCCACAATACAAAGAAAAAAATATATAATTCAACTCCAAAAAGATTGAGGGCTTTTCACGCTTC
* *
3746 AAATTTCGTTTTT-GTTTTTTTTTTTCCAAATTAATTTCTAATTAAATCGAAACAAGATTGAGAT
1 AAATATCGTTTTTCG---TTTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGAT
* *
3810 ACTCGAAAACACAAATCCTTATATTCAATATTGCTGAGATTTGGTTCGATGAATATAGATATTTC
63 ACTCGAAAAAACAAATCCTTATATTCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTC
* * *
3875 AAGGA--CTATTCGCACCAAAAATCATGCAGAATTGAGCCGGGGCTCCAGAATTCGTTTTTTG-C
128 AAGGAGTCT-TTTGCGCCAAAAATCATGCAGAATTGAGCCGGGGCTCCAGAATTCGTTTTTAGCC
* * *
3937 AAGAAACCGTGATGATTAGTACACAATTTCGGCTAAAAAACTGAACCGAAAAATTTTCTCTCAAT
192 AA-AAACCGTGATGGTTAGTACACGATTTCGGCTAAAAAACTGACCCGAAAAATTTTCTCTCAAT
*
4002 TTTTTGCCACAATACAAAGAAAAAAATATATAATTCAACTCCAAAAAGATTGAGGG-GTTTCACG
256 TTTTTGCCACAATACAAAGAAAAAAATATATAATTCAACTCCAAAAAGATTGAGGGCTTTTCACG
4066 CTTC
321 CTTC
*
4070 AAATATCG-TTTTCATTTTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATAC
1 AAATATCGTTTTTC-GTTTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATAC
* * * *
4134 TCGAAAAAACAAATACTTATATTCAATATTGCTGAGATTTGGTTCGAAGAATACAGATATTTCAA
65 TCGAAAAAACAAATCCTTATATTCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAA
* * * * * *
4199 GGAGAC-TTTGCACAAAAAATCATGCAGAACTGACCCGGGGCTCCAGAATTCGTTTTTAGCCAGA
130 GGAGTCTTTTGCGCCAAAAATCATGCAGAATTGAGCCGGGGCTCCAGAATTCGTTTTTAGCCAAA
* * * *
4263 AACCGTGTTGGTTAGTACACGATTTTGACTAAAAAGCTGACCCGAAAAATTTTCTCTCAATTTTT
195 AACCGTGATGGTTAGTACACGATTTCGGCTAAAAAACTGACCCGAAAAATTTTCTCTCAATTTTT
* * ** * * *
4328 TGCCAAAATACAAAGAAAAAAAAATATAGCTCAAATCCAAAAAGATTGAGAGCTTTTCACGTTTC
260 TGCCACAATACAAAGAAAAAAATATATAATTCAACTCCAAAAAGATTGAGGGCTTTTCACGCTTC
*
4393 AAATATCG-TTTTCGTTTTTTTTTTCTGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATA
1 AAATATCGTTTTTCG--TTTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATA
* * * *
4457 CTCGAAAAAACAAATCCTTATATGCAATATTGCTGAGATTTGCTTCGATGATTATAGGTATTTTA
64 CTCGAAAAAACAAATCCTTATATTCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCA
* * * * *
4522 AGGAG-CTTTTGCGCCAAAAATCACGTAGAATTGAGCCGAGGCTCTAGATTTCGTTTTTAGCCAA
129 AGGAGTCTTTTGCGCCAAAAATCATGCAGAATTGAGCCGGGGCTCCAGAATTCGTTTTTAGCCAA
* *
4586 AAACCGTGATGGTTAGTACAC-ACTTTCAGCTAAAAAACTGACCCGAAAAATTTTCTATCAATTT
194 AAACCGTGATGGTTAGTACACGA-TTTCGGCTAAAAAACTGACCCGAAAAATTTTCTCTCAATTT
* *
4650 TTTGCCACAATACAAAG-AAAAAATATATAATTAAAATCCAAAAAGATTGAGGGCTTTTCACGCT
258 TTTGCCACAATACAAAGAAAAAAATATATAATTCAACTCCAAAAAGATTGAGGGCTTTTCACGCT
**
4714 AG
323 TC
* *
4716 AAATATCGTTTTTCGTTTTCTTTTTCCAAATTAATTTCTATTTAAATCGAAACAAGATTGAGATA
1 AAATATCGTTTTTCG-TTT-TTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATA
* * * * * *
4781 CTTGAAAAACCAAATCTTTATATTCAATATTGCTGAGATTTGGTTTGATGAATATAAATATATT-
64 CTCGAAAAAACAAATCCTTATATTCAATATTGCTGAGATTTGCTTCGATGAATATAGATAT-TTC
* * * * *
4845 AAGGAGTC-TTTGCACCAAAAATCTTGCAGAATTCA-CTAGGGGCTCCAGAATTCGTTTTCAGCC
128 AAGGAGTCTTTTGCGCCAAAAATCATGCAGAATTGAGC-CGGGGCTCCAGAATTCGTTTTTAGCC
* *
4908 AGAAACCGTGATGGTTATTACACGATTTCGGCTAAAAAACTGACCCGAAAAATTTTCTCTCAATT
192 AAAAACCGTGATGGTTAGTACACGATTTCGGCTAAAAAACTGACCCGAAAAATTTTCTCTCAATT
* *
4973 TTTTGCCACAATACAAAG-AAAAAA-ATATAATTCAACTCCAAAAATATTGAGGACTTTTCACGC
257 TTTTGCCACAATACAAAGAAAAAAATATATAATTCAACTCCAAAAAGATTGAGGGCTTTTCACGC
5036 TTC
322 TTC
* *
5039 AAATATCGTTTGTC-ATTTTTTTCCAGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATAC
1 AAATATCGTTTTTCGTTTTTTTTCC-GAATTAATTTCTAATTAAATCGAAACAAGATTGAGATAC
*
5103 TCGAAAAAACAAATCCTTATATTCAATATTGCTGAGATTTGCTTCGATGATTATAGATATTTCAA
65 TCGAAAAAACAAATCCTTATATTCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAA
* * * *
5168 GGAGT-TTTTGCGCCAAAAATCATGCAGAATTGAGCCGGCGTTCAAGAATTTGTTTTTAGCCAAA
130 GGAGTCTTTTGCGCCAAAAATCATGCAGAATTGAGCCGGGGCTCCAGAATTCGTTTTTAGCCAAA
*
5232 AACCGTGATGGTTAGTACACGATTTCGGCTAAAAAACTGACACGAAAAATTTTCTCTCAATTTTT
195 AACCGTGATGGTTAGTACACGATTTCGGCTAAAAAACTGACCCGAAAAATTTTCTCTCAATTTTT
* * *
5297 TGCCGCAATAC-AA-AAAGAAA-ATATAATTCAACTCCAAAAAGATTGAGGCCTTTTCACGCTTC
260 TGCCACAATACAAAGAAAAAAATATATAATTCAACTCCAAAAAGATTGAGGGCTTTTCACGCTTC
* * *
5359 AAATATCGTTTGTCGTTTTTTATTCCGAATTAATTTCTAACTAAATCGAAACAAGATTGTGATAC
1 AAATATCGTTTTTCGTTTTTT-TTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATAC
*
5424 TCGAAAAAACAAATCCTTATATTCAATATTGCTGAGATTTGCTTCGATGATTATAGATATTTCAA
65 TCGAAAAAACAAATCCTTATATTCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAA
* * * * *
5489 GGAGT-TTTTGCGCCAAAAATCATACAGAATTGAGCCGGGGTTCAAGAATTTGCTTTTAGCCAAA
130 GGAGTCTTTTGCGCCAAAAATCATGCAGAATTGAGCCGGGGCTCCAGAATTCGTTTTTAGCCAAA
* *
5553 AACCGTTATGGTTAGTACACGATTTCAGCTAAAAAACTGACCCGAAAAATTTTCTCTCAATTTTT
195 AACCGTGATGGTTAGTACACGATTTCGGCTAAAAAACTGACCCGAAAAATTTTCTCTCAATTTTT
5618 TGCCACAATACAAAGAAAAAAATATATAATTCAACTCCAAAAAGATTGAGGGCTTTTCACGCTTC
260 TGCCACAATACAAAGAAAAAAATATATAATTCAACTCCAAAAAGATTGAGGGCTTTTCACGCTTC
* *
5683 AAATATCGTTTTTCGTTTTTTTTCCAAATTAATTTCTAATTAAATCGAAACAAGATTGAGATATT
1 AAATATCGTTTTTCGTTTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATACT
*
5748 CGAAAAAACAAATCCTTATATTCAATATTGCTGAGATTTGGTTCGATGAATATAGATATTTCAAG
66 CGAAAAAACAAATCCTTATATTCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAG
* * * * *
5813 GAGTCTTTT-CACCAAAAATCATACAAAATTGAGTCGGGGCTCCAGAATTCGTTTTTAGCCAGAA
131 GAGTCTTTTGCGCCAAAAATCATGCAGAATTGAGCCGGGGCTCCAGAATTCGTTTTTAGCCAAAA
5877 ACCGTGATG
196 ACCGTGATG
5886 ACCCGAAAAA
Statistics
Matches: 1934, Mismatches: 172, Indels: 68
0.89 0.08 0.03
Matches are distributed among these distances:
320 70 0.04
321 458 0.24
322 273 0.14
323 313 0.16
324 575 0.30
325 245 0.13
ACGTcount: A:0.36, C:0.16, G:0.15, T:0.33
Consensus pattern (324 bp):
AAATATCGTTTTTCGTTTTTTTTCCGAATTAATTTCTAATTAAATCGAAACAAGATTGAGATACT
CGAAAAAACAAATCCTTATATTCAATATTGCTGAGATTTGCTTCGATGAATATAGATATTTCAAG
GAGTCTTTTGCGCCAAAAATCATGCAGAATTGAGCCGGGGCTCCAGAATTCGTTTTTAGCCAAAA
ACCGTGATGGTTAGTACACGATTTCGGCTAAAAAACTGACCCGAAAAATTTTCTCTCAATTTTTT
GCCACAATACAAAGAAAAAAATATATAATTCAACTCCAAAAAGATTGAGGGCTTTTCACGCTTC
Found at i:7160 original size:323 final size:322
Alignment explanation
Indices: 5884--7495 Score: 2154
Period size: 323 Copynumber: 5.0 Consensus size: 322
5874 GAAACCGTGA
*
5884 TGACCCGAAAAATTTTCTCTCAA-TTTTTACCACAATACAAAGAAAAAAAAATATATAATTCAAC
1 TGACCCGAAAAATTTTCTCTCAATTTTTTGCCACAATACAAAG---AAAAAATATATAATTCAAC
* * *
5948 TCCAAAAAGATTGAGGGCTTTTCACGCTTGAAATATCGTTTTTGGTTTTTTTTTCCAAATTAATT
63 TCCAAAAAGATTGAGGGCTTTTCACGCTTCAAATATCGTTTTTCG-TTTTTTTTCCGAATTAATT
* * * * **
6013 TCTAATTAAATCCAAACAAGATTGAGATACTTGAAAAACCAAAACCTTATATTCAATATTTTTGA
127 TCTAATTAAATCGAAACAAGATTGAGATACTCGAAAAAACAAATCCTTATATTCAATATTGCTGA
* * * * * * * *
6078 GATTTGGTTCGATGAACATAAATATTTTAAAGAGTCTTTGCACCAAAAATCATGAAGAATTGAGT
192 GATTTGCTTCGATGAAAATAGATATTTCAAGGAGTCTTTGCGCCAAAAATCATGCAGAATTGAGC
* *
6143 AGGGGCTCCAGAATTT-GTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAGCTAAAAA
257 CGGGGTTCCAG-ATTTCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAGCTAAAAA
6207 AC
321 AC
*
6209 TGACCCGAAAAATTTTCTCTCAATTTTTTGCCACAATACAAAGAAAAAA-ATATAATTGAACTCC
1 TGACCCGAAAAATTTTCTCTCAATTTTTTGCCACAATACAAAGAAAAAATATATAATTCAACTCC
* * *
6273 AAAAAGGTTGAGGACTTTTCACGCTTCAAATATCGTTTGTCGTTTTTTTTCCGAATTAATTTCTA
66 AAAAAGATTGAGGGCTTTTCACGCTTCAAATATCGTTTTTCGTTTTTTTTCCGAATTAATTTCTA
*
6338 ATTAAATC-AAATCAAGATTGAGATTCTCGAAAAAACAAATCCTTATATTCAATATTGCTGAGAT
131 ATTAAATCGAAA-CAAGATTGAGATACTCGAAAAAACAAATCCTTATATTCAATATTGCTGAGAT
** * *
6402 TTGCTTCGATGATTATAGATATTTCAAGGACTTTTTGCGCCAAAAATCATGCAGAATTGAGCCGG
195 TTGCTTCGATGAAAATAGATATTTCAAGGAGTCTTTGCGCCAAAAATCATGCAGAATTGAGCCGG
* * * **
6467 GGTTCAAGAATTCGTTTTTAGCCAAAAACCGTGAT-G---GTACATGATTTTGGCTAAAAAAC
260 GGTTCCAGATTTCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAGCTAAAAAAC
*
6526 TGACCCGAAAAATTTTCTCTCAATTTTTTGCCACAATACAAA-AAAATATATATAATTCAACTCC
1 TGACCCGAAAAATTTTCTCTCAATTTTTTGCCACAATACAAAGAAAAAATATATAATTCAACTCC
* *
6590 AAAAAGATTGAGGGCTTTTCACGCTTCAAATATCGTTTGTCGTTTTTTTTCCGAATTAATTTCAA
66 AAAAAGATTGAGGGCTTTTCACGCTTCAAATATCGTTTTTCGTTTTTTTTCCGAATTAATTTCTA
*
6655 ACTAAATCGAAACAAGATTGAGATACTCGAAAAAACAAATCCTTATATTCAATATTGCTGAGATT
131 ATTAAATCGAAACAAGATTGAGATACTCGAAAAAACAAATCCTTATATTCAATATTGCTGAGATT
* * * * *
6720 TTCTTCGATGATTATATATATATATTTCAAGGAGTTTTTGCGCCAAAAATAATGCAGTATTGAGC
196 TGCTTCGATGA--A-A-ATAGATATTTCAAGGAGTCTTTGCGCCAAAAATCATGCAGAATTGAGC
* * * *
6785 CGGGGTTCAAGAATTCGTTTTTAGTCAAAAACCGTTATGGTTAGTACACGATTTCAGCTAAAAAA
257 CGGGGTTCCAGATTTCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAGCTAAAAAA
6850 C
322 C
*
6851 TGACCCGAAAAATTTTCTCTCAATTTTTTGCCACAATACAAAGAAAAAAT-TATTAATT-AAATC
1 TGACCCGAAAAATTTTCTCTCAATTTTTTGCCACAATACAAAGAAAAAATATA-TAATTCAACTC
* * * * *
6914 CAAAAGGATTGAGGCCTTTTCACGCTTCAATTATCATTTTTCGTTTTTTTTTTTCCAAATTAATT
65 CAAAAAGATTGAGGGCTTTTCACGCTTCAAATATCGTTTTTCG---TTTTTTTTCCGAATTAATT
* * * * * *
6979 TCTAATTAATTCGAAACAAGATTGAGATACTC-ATAAAAA-AACTCCTTATATCCAATGTGGCTA
127 TCTAATTAAATCGAAACAAGATTGAGATACTCGA-AAAAACAAATCCTTATATTCAATATTGCTG
* ** * * *
7042 ACATTTGGATCGATGAAAATAGATATTTCAAGGTGTCATTGCACCAAAAATCATGCAGAATTGAG
191 AGATTTGCTTCGATGAAAATAGATATTTCAAGGAGTCTTTGCGCCAAAAATCATGCAGAATTGAG
* ** * * *
7107 TCGGGGTTCCAGATTTCGTTTTTAGCCAAAAATTGTGTTGGTTAGTGCACGATTTCGGCTAAAAA
256 CCGGGGTTCCAGATTTCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAGCTAAAAA
7172 AC
321 AC
* * * * *
7174 GGACCCGAAAAATTTTCTTTCAATTTTTTGCCAAAATAAAAAGAAAAAATATATAATTCAAATCC
1 TGACCCGAAAAATTTTCTCTCAATTTTTTGCCACAATACAAAGAAAAAATATATAATTCAACTCC
* * **
7239 AAAAAGATTGAGGGGTTTTCACACTTCAAATATCGTTTTTTAATTTTTTTTCCGAATTAATTTCT
66 AAAAAGATTGAGGGCTTTTCACGCTTCAAATATCG-TTTTTCGTTTTTTTTCCGAATTAATTTCT
7304 AATTAAATCGAAACAAGATTGAGATACTCGAAAAAACAAATCCTTATATTCAATATTGCTGAGAT
130 AATTAAATCGAAACAAGATTGAGATACTCGAAAAAACAAATCCTTATATTCAATATTGCTGAGAT
** ** * * * *
7369 TTGCTTCGATGATTACGGGTATTTCAAGGAG-CTTTTGCGCCAAAAATCACGCAAAATTCAGCCG
195 TTGCTTCGATGAAAATAGATATTTCAAGGAGTC-TTTGCGCCAAAAATCATGCAGAATTGAGCCG
** *
7433 GGGCCCCAGATTTCGTTTTTAGCCAAAAACCGTGATAGTTAGTACACGATTTCAGCTAAAAAA
259 GGGTTCCAGATTTCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAGCTAAAAAA
Statistics
Matches: 1132, Mismatches: 130, Indels: 52
0.86 0.10 0.04
Matches are distributed among these distances:
316 5 0.00
317 207 0.18
318 3 0.00
320 7 0.01
321 237 0.21
322 107 0.09
323 280 0.25
324 38 0.03
325 135 0.12
326 29 0.03
327 32 0.03
328 52 0.05
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.33
Consensus pattern (322 bp):
TGACCCGAAAAATTTTCTCTCAATTTTTTGCCACAATACAAAGAAAAAATATATAATTCAACTCC
AAAAAGATTGAGGGCTTTTCACGCTTCAAATATCGTTTTTCGTTTTTTTTCCGAATTAATTTCTA
ATTAAATCGAAACAAGATTGAGATACTCGAAAAAACAAATCCTTATATTCAATATTGCTGAGATT
TGCTTCGATGAAAATAGATATTTCAAGGAGTCTTTGCGCCAAAAATCATGCAGAATTGAGCCGGG
GTTCCAGATTTCGTTTTTAGCCAAAAACCGTGATGGTTAGTACACGATTTCAGCTAAAAAAC
Done.