Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007230.1 Corchorus capsularis cultivar CVL-1 contig07251, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 24314
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34


Found at i:23579 original size:14 final size:14

Alignment explanation


    Indices: 23562--23588  Score: 54
    Period size: 14  Copynumber: 1.9  Consensus size: 14

      23552 TATGTGCTAA

                          
      23562 AAAGTTTATAATTC
          1 AAAGTTTATAATTC

                         
      23576 AAAGTTTATAATT
          1 AAAGTTTATAATT

      23589 GTTATTTTTA


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   13  1.00

ACGTcount: A:0.44, C:0.04, G:0.07, T:0.44


Consensus pattern (14 bp):   
AAAGTTTATAATTC
Done.