Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01007232.1 Corchorus capsularis cultivar CVL-1 contig07253, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 33956
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.32
Found at i:1876 original size:16 final size:16
Alignment explanation
Indices: 1855--1887 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
1845 GGTGCTTGAC
1855 AAAAGAGAAGGACGGA
1 AAAAGAGAAGGACGGA
1871 AAAAGAGAAGGACGGA
1 AAAAGAGAAGGACGGA
1887 A
1 A
1888 GGAACCATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.58, C:0.06, G:0.36, T:0.00
Consensus pattern (16 bp):
AAAAGAGAAGGACGGA
Found at i:7056 original size:22 final size:22
Alignment explanation
Indices: 7031--7129 Score: 92
Period size: 22 Copynumber: 4.5 Consensus size: 22
7021 ATAACCACAT
*
7031 TATGAAATTGTGATAATTACAC
1 TATGAAATTTTGATAATTACAC
* *
7053 TATGAAATTTTGATAATTTCGC
1 TATGAAATTTTGATAATTACAC
* * *
7075 TCTAAAAATTTTGATAATATTC-C
1 TAT-GAAATTTTGATAAT-TACAC
**
7098 TATGAAATTTTGATAACGACAC
1 TATGAAATTTTGATAATTACAC
*
7120 TATGGAATTT
1 TATGAAATTT
7130 CAAGAACCTC
Statistics
Matches: 63, Mismatches: 11, Indels: 6
0.79 0.14 0.08
Matches are distributed among these distances:
21 1 0.02
22 43 0.68
23 16 0.25
24 3 0.05
ACGTcount: A:0.37, C:0.10, G:0.12, T:0.40
Consensus pattern (22 bp):
TATGAAATTTTGATAATTACAC
Found at i:7220 original size:22 final size:21
Alignment explanation
Indices: 7095--7263 Score: 81
Period size: 22 Copynumber: 7.7 Consensus size: 21
7085 TTGATAATAT
* *
7095 TCCTATGAAATTTTGATAACG
1 TCCTATGAAATTTTGAAAACC
* * *
7116 ACACTATGGAA-TTTCAAGAACC
1 TC-CTATGAAATTTTGAA-AACC
* ***
7138 TCCCAATGAAATTTTTTCAACC
1 T-CCTATGAAATTTTGAAAACC
* **
7160 TTCCCATGAAATTTTGTTAACC
1 -TCCTATGAAATTTTGAAAACC
7182 TTCCTAT-AGAATTTTGAAAACC
1 -TCCTATGA-AATTTTGAAAACC
*
7204 TCACTATGAAATTTTGATAAAGCT
1 TC-CTATGAAATTTTGA-AAA-CC
* * *
7228 TCATATAAAATTTTGATAACC
1 TCCTATGAAATTTTGAAAACC
*
7249 TCCTCGTGAAATTTT
1 TCCT-ATGAAATTTT
7264 ATTTACCTTT
Statistics
Matches: 112, Mismatches: 25, Indels: 21
0.71 0.16 0.13
Matches are distributed among these distances:
21 12 0.11
22 76 0.68
23 21 0.19
24 3 0.03
ACGTcount: A:0.34, C:0.19, G:0.10, T:0.37
Consensus pattern (21 bp):
TCCTATGAAATTTTGAAAACC
Found at i:7249 original size:45 final size:44
Alignment explanation
Indices: 7156--7263 Score: 121
Period size: 45 Copynumber: 2.4 Consensus size: 44
7146 AAATTTTTTC
* * *
7156 AACCTTCC-CATGAAATTTTGTTAACCTTCCTATAGAATTTTGAA
1 AACC-TCCTCATGAAATTTTGTAAACCTTCATATAAAATTTTGAA
* *
7200 AACCTCACT-ATGAAATTTTGATAAAGCTTCATATAAAATTTTGAT
1 AACCTC-CTCATGAAATTTTG-TAAACCTTCATATAAAATTTTGAA
*
7245 AACCTCCTCGTGAAATTTT
1 AACCTCCTCATGAAATTTT
7264 ATTTACCTTT
Statistics
Matches: 54, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
43 2 0.04
44 18 0.33
45 34 0.63
ACGTcount: A:0.34, C:0.19, G:0.09, T:0.38
Consensus pattern (44 bp):
AACCTCCTCATGAAATTTTGTAAACCTTCATATAAAATTTTGAA
Found at i:7414 original size:22 final size:22
Alignment explanation
Indices: 7332--7414 Score: 53
Period size: 22 Copynumber: 3.8 Consensus size: 22
7322 TTAAACCACT
* * * *
7332 CTATGAAATTCTGATAGCCCCC
1 CTATAAAATTTTGATAACCTCC
* *
7354 CTATAAAATTTTGA-AAACTAAAC
1 CTATAAAATTTTGATAACCT--CC
* **
7377 C-ATGAAATTTCAATAACCTCC
1 CTATAAAATTTTGATAACCTCC
7398 CTATAAAATTTTGATAA
1 CTATAAAATTTTGATAA
7415 ACAAAAGCCT
Statistics
Matches: 43, Mismatches: 14, Indels: 8
0.66 0.22 0.12
Matches are distributed among these distances:
21 4 0.09
22 33 0.77
23 6 0.14
ACGTcount: A:0.41, C:0.20, G:0.07, T:0.31
Consensus pattern (22 bp):
CTATAAAATTTTGATAACCTCC
Found at i:9595 original size:26 final size:26
Alignment explanation
Indices: 9566--9617 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
9556 GATGGTTTGG
* * *
9566 CAGAAATTGAAAATTTGTAAGTAAAA
1 CAGAAATTAAAAATTTCTAAATAAAA
9592 CAGAAATTAAAAATTTCTAAATAAAA
1 CAGAAATTAAAAATTTCTAAATAAAA
9618 TATTTTAATA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.58, C:0.06, G:0.10, T:0.27
Consensus pattern (26 bp):
CAGAAATTAAAAATTTCTAAATAAAA
Found at i:9693 original size:15 final size:15
Alignment explanation
Indices: 9673--9701 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
9663 ATTTTATAAA
9673 TAAAATTATATTTTG
1 TAAAATTATATTTTG
9688 TAAAATTATATTTT
1 TAAAATTATATTTT
9702 AATAATGGCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.55
Consensus pattern (15 bp):
TAAAATTATATTTTG
Found at i:10787 original size:266 final size:265
Alignment explanation
Indices: 10303--10830 Score: 968
Period size: 266 Copynumber: 2.0 Consensus size: 265
10293 AACCGACTTG
*
10303 GTCGGTTCCATCGAGTTCTTGGTTGGATCGGGTTATTCACAGTACAAGCAAAACAATAACATTAT
1 GTCGGTTCCATCGAGTTCTTGGTTGGATCGGGTTATTCACAGTACAAGCAAAACAACAACATTAT
*
10368 GTCACAATTTTCATTTAGCTTTCAACCTTCAGGTCAGGACTGTAAAGTCTAAATAAGTTGCAAAA
66 GTCACAATTTTCATTTAGCTTTCAACCTTCAAGTCAGGACTGTAAAGTCTAAATAAGTTGCAAAA
10433 TGTAAATGTTAGACAGTTAGAGTCATTTACAACCTTTAGCAGCCACCAAATTAATGTTCTATACA
131 TGTAAATGTTAGACAGTTAGAGTCATTTACAACCTTTAGCAGCCACCAAATTAATGTTCTATACA
*
10498 ATTAAATGAGGCCATTTTTAGCTTTTTAAATTCTAAGCCTAACTTAACTTGTATTCCTATGGTTA
196 ATTAAATGAAGCCATTTTTAGCTTTTTAAATTCTAAGCCTAACTTAACTTGTATTCCTATGGTTA
10563 TGTAA
261 TGTAA
* *
10568 GTCGGTTCCCGTCGAGTTCTTGGTTGGATCGGGTTATTCGCAGTACAAGCAAAACAACAACATTA
1 GTCGGTT-CCATCGAGTTCTTGGTTGGATCGGGTTATTCACAGTACAAGCAAAACAACAACATTA
10633 TGTCACAATTTTCATTTAGCTTTCAACCTTCAAGTCA-GATCTGTAAAGTCTAAATAAGTTGCAA
65 TGTCACAATTTTCATTTAGCTTTCAACCTTCAAGTCAGGA-CTGTAAAGTCTAAATAAGTTGCAA
*
10697 AATGTAAATGTTAGATAGTTAGAGTCATTTACAACCTTTAGCAGCCACCAAATTAATGTTCTATA
129 AATGTAAATGTTAGACAGTTAGAGTCATTTACAACCTTTAGCAGCCACCAAATTAATGTTCTATA
*
10762 CAATTAAATGAAGTCATTTTTAGCTTTTTAAATTCTAAGCCTAACTTAACTTGTATTCCTATGGT
194 CAATTAAATGAAGCCATTTTTAGCTTTTTAAATTCTAAGCCTAACTTAACTTGTATTCCTATGGT
10827 TATG
259 TATG
10831 CTGCACAAAA
Statistics
Matches: 254, Mismatches: 7, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
265 9 0.04
266 245 0.96
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.35
Consensus pattern (265 bp):
GTCGGTTCCATCGAGTTCTTGGTTGGATCGGGTTATTCACAGTACAAGCAAAACAACAACATTAT
GTCACAATTTTCATTTAGCTTTCAACCTTCAAGTCAGGACTGTAAAGTCTAAATAAGTTGCAAAA
TGTAAATGTTAGACAGTTAGAGTCATTTACAACCTTTAGCAGCCACCAAATTAATGTTCTATACA
ATTAAATGAAGCCATTTTTAGCTTTTTAAATTCTAAGCCTAACTTAACTTGTATTCCTATGGTTA
TGTAA
Found at i:11033 original size:11 final size:11
Alignment explanation
Indices: 11001--11051 Score: 50
Period size: 11 Copynumber: 4.6 Consensus size: 11
10991 TTTATATTTT
*
11001 TTATTTATAAA
1 TTATATATAAA
*
11012 TTAT-TACAAA
1 TTATATATAAA
*
11022 TAATATATAAA
1 TTATATATAAA
*
11033 TTATATTTATAA
1 TTATATATA-AA
11045 TTATATA
1 TTATATA
11052 ATATAACTAT
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
10 8 0.25
11 16 0.50
12 8 0.25
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (11 bp):
TTATATATAAA
Found at i:12744 original size:55 final size:54
Alignment explanation
Indices: 12682--12844 Score: 202
Period size: 55 Copynumber: 3.0 Consensus size: 54
12672 GTAGAAGCGT
* * *
12682 CTTCAAGGAACACTGGGAGATCACGAAGATTTCAGGTGAGTGTCAGCATTGAAGC
1 CTTCAAGGAACACTGGGAGATCACG-AGATCTCAGGCGAGCGTCAGCATTGAAGC
* * * *
12737 TTTCAAGGAACACT-GGAGATCCCTGAGATCTCAGGCGAGCATCAGCAATGAAGC
1 CTTCAAGGAACACTGGGAGATCAC-GAGATCTCAGGCGAGCGTCAGCATTGAAGC
* * *
12791 CTTCAAGGAACACTGAGAAATCACGGAGATCTCAAGCGAGCGTCAGCATTGAAG
1 CTTCAAGGAACACTGGGAGATCAC-GAGATCTCAGGCGAGCGTCAGCATTGAAG
12845 ATTGATAGGA
Statistics
Matches: 91, Mismatches: 15, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
54 45 0.49
55 46 0.51
ACGTcount: A:0.33, C:0.21, G:0.27, T:0.19
Consensus pattern (54 bp):
CTTCAAGGAACACTGGGAGATCACGAGATCTCAGGCGAGCGTCAGCATTGAAGC
Found at i:12782 original size:54 final size:53
Alignment explanation
Indices: 12682--12844 Score: 200
Period size: 54 Copynumber: 3.0 Consensus size: 53
12672 GTAGAAGCGT
* * *
12682 CTTCAAGGAACACTGGGAGATCACGAAGATTTCAGGTGAGTGTCAGCATTGAAGC
1 CTTCAAGGAACACT-GGAGATCACG-AGATCTCAGGCGAGCGTCAGCATTGAAGC
* * * *
12737 TTTCAAGGAACACTGGAGATCCCTGAGATCTCAGGCGAGCATCAGCAATGAAGC
1 CTTCAAGGAACACTGGAGATCAC-GAGATCTCAGGCGAGCGTCAGCATTGAAGC
* *
12791 CTTCAAGGAACACTGAGAAATCACGGAGATCTCAAGCGAGCGTCAGCATTGAAG
1 CTTCAAGGAACACTG-GAGATCAC-GAGATCTCAGGCGAGCGTCAGCATTGAAG
12845 ATTGATAGGA
Statistics
Matches: 92, Mismatches: 14, Indels: 4
0.84 0.13 0.04
Matches are distributed among these distances:
54 46 0.50
55 46 0.50
ACGTcount: A:0.33, C:0.21, G:0.27, T:0.19
Consensus pattern (53 bp):
CTTCAAGGAACACTGGAGATCACGAGATCTCAGGCGAGCGTCAGCATTGAAGC
Found at i:13080 original size:55 final size:54
Alignment explanation
Indices: 12989--13152 Score: 222
Period size: 55 Copynumber: 3.0 Consensus size: 54
12979 GTAGAAGCGT
* *
12989 CTTCAAGGAACACTAGGAGATCACGCAGAT-TCCAGGCGAGTGTCAGCATTGAAGC
1 CTTCAAGGAACACTGGGAGATCACG-AGATCT-CAGGCGAGCGTCAGCATTGAAGC
* * *
13044 TTTCAAGGAACACTGGGAGATCACAGAGATCTCAGGCGAACATCAGCATTGAAGC
1 CTTCAAGGAACACTGGGAGATCAC-GAGATCTCAGGCGAGCGTCAGCATTGAAGC
* *
13099 CTTCAAGGAACACTGGGAAATCACGGAGATCTCAGGTGAGCGTCAGCATTGAAG
1 CTTCAAGGAACACTGGGAGATCAC-GAGATCTCAGGCGAGCGTCAGCATTGAAG
13153 ATTGATAGGA
Statistics
Matches: 96, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
55 94 0.98
56 2 0.02
ACGTcount: A:0.32, C:0.22, G:0.27, T:0.18
Consensus pattern (54 bp):
CTTCAAGGAACACTGGGAGATCACGAGATCTCAGGCGAGCGTCAGCATTGAAGC
Found at i:13218 original size:308 final size:307
Alignment explanation
Indices: 12642--13280 Score: 1044
Period size: 308 Copynumber: 2.1 Consensus size: 307
12632 ATTGCGCTGG
* * *
12642 GCAAGTGTTTAGCTGTGGAAGCGTCGGGCTGTAGAAGCGTCTTCAAGGAACACTGGGAGATCACG
1 GCAAGTCTGTAGCTGTGGAAGCGTCGGGCTGTAGAAGCGTCTTCAAGGAACACTAGGAGATCACG
* * * *
12707 AAGATTTCAGGTGAGTGTCAGCATTGAAGCTTTCAAGGAACACTGGAGATCCCTGAGATCTCAGG
66 AAGATTCCAGGCGAGTGTCAGCATTGAAGCTTTCAAGGAACACTGGAGATCACAGAGATCTCAGG
*
12772 CGAGCATCAGCAATGAAGCCTTCAAGGAACACTGAGAAATCACGGAGATCTCAAGCGAGCGTCAG
131 CGAACATCAGCAATGAAGCCTTCAAGGAACACTGAGAAATCACGGAGATCTCAAGCGAGCGTCAG
* *
12837 CATTGAAGATTGATAGGAGCCTCTGATAAACATCGGGAAATCGCGAAGATTTCAGCAGAATGTCG
196 CATTGAAGATTGATAGGAGCCTCTAATAAACATCGGGAAATCGCGAAGATTTCAACAGAATGTCG
* *
12902 GCAGAGAAAATTGACAGAAACCACAAAGCTTTTAAATCTTGCACAGA
261 GCAGAGAAAATCGACAGAAACCACAAAGCTTTCAAATCTTGCACAGA
*
12949 GCAAGTCTGTAGCTATGGAAGCGTCGGGCTGTAGAAGCGTCTTCAAGGAACACTAGGAGATCACG
1 GCAAGTCTGTAGCTGTGGAAGCGTCGGGCTGTAGAAGCGTCTTCAAGGAACACTAGGAGATCACG
*
13014 CAGATTCCAGGCGAGTGTCAGCATTGAAGCTTTCAAGGAACACTGGGAGATCACAGAGATCTCAG
66 AAGATTCCAGGCGAGTGTCAGCATTGAAGCTTTCAAGGAACACT-GGAGATCACAGAGATCTCAG
* * * *
13079 GCGAACATCAGCATTGAAGCCTTCAAGGAACACTGGGAAATCACGGAGATCTCAGGTGAGCGTCA
130 GCGAACATCAGCAATGAAGCCTTCAAGGAACACTGAGAAATCACGGAGATCTCAAGCGAGCGTCA
* *
13144 GCATTGAAGATTGATAGGAGCCTCTAATAAACATTGGGAAATCGCGGAGATTTCAACAGAATGTC
195 GCATTGAAGATTGATAGGAGCCTCTAATAAACATCGGGAAATCGCGAAGATTTCAACAGAATGTC
* * * * *
13209 TGTAGAGAAAATCGACAGAAACCACAAAGCTTTCAGATTTTGCAGAGA
260 GGCAGAGAAAATCGACAGAAACCACAAAGCTTTCAAATCTTGCACAGA
13257 GCAAGTCTGTAGCTGTGGAAGCGT
1 GCAAGTCTGTAGCTGTGGAAGCGT
13281 GTTTGAAGTT
Statistics
Matches: 305, Mismatches: 26, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
307 102 0.33
308 203 0.67
ACGTcount: A:0.33, C:0.19, G:0.27, T:0.21
Consensus pattern (307 bp):
GCAAGTCTGTAGCTGTGGAAGCGTCGGGCTGTAGAAGCGTCTTCAAGGAACACTAGGAGATCACG
AAGATTCCAGGCGAGTGTCAGCATTGAAGCTTTCAAGGAACACTGGAGATCACAGAGATCTCAGG
CGAACATCAGCAATGAAGCCTTCAAGGAACACTGAGAAATCACGGAGATCTCAAGCGAGCGTCAG
CATTGAAGATTGATAGGAGCCTCTAATAAACATCGGGAAATCGCGAAGATTTCAACAGAATGTCG
GCAGAGAAAATCGACAGAAACCACAAAGCTTTCAAATCTTGCACAGA
Found at i:13531 original size:17 final size:17
Alignment explanation
Indices: 13505--13554 Score: 82
Period size: 17 Copynumber: 2.9 Consensus size: 17
13495 TCCCCCTCAT
*
13505 GGTACCAGGTAACATGA
1 GGTACCAGGTAGCATGA
*
13522 GGTACTAGGTAGCATGA
1 GGTACCAGGTAGCATGA
13539 GGTACCAGGTAGCATG
1 GGTACCAGGTAGCATG
13555 TCTGACAACT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.30, C:0.16, G:0.34, T:0.20
Consensus pattern (17 bp):
GGTACCAGGTAGCATGA
Found at i:27873 original size:25 final size:25
Alignment explanation
Indices: 27824--27874 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 25
27814 TTAGTAGAAT
*
27824 AATTGTAAAAGTTTATTTCTAAAAA
1 AATTGTAAAAGTATATTTCTAAAAA
27849 AATTGTAAAAGAATATATTT-TAAAAA
1 AATTGTAAAAG--TATATTTCTAAAAA
27875 TTCTAATATA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 11 0.48
26 6 0.26
27 6 0.26
ACGTcount: A:0.53, C:0.02, G:0.08, T:0.37
Consensus pattern (25 bp):
AATTGTAAAAGTATATTTCTAAAAA
Found at i:28256 original size:42 final size:39
Alignment explanation
Indices: 28205--28282 Score: 95
Period size: 40 Copynumber: 1.9 Consensus size: 39
28195 AATAAATTTT
28205 AATCATAATAAATTATTATAAACATCA-AATAGTAAAATGTC
1 AATCATAATAAATT-TT-TAAA-ATCAGAATAGTAAAATGTC
* *
28246 AATCTATAATAACTTTTTAAAATTAGAATAGTAAAAT
1 AATC-ATAATAAATTTTTAAAATCAGAATAGTAAAAT
28283 AAAATAATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
39 3 0.09
40 15 0.45
41 6 0.18
42 9 0.27
ACGTcount: A:0.53, C:0.08, G:0.05, T:0.35
Consensus pattern (39 bp):
AATCATAATAAATTTTTAAAATCAGAATAGTAAAATGTC
Found at i:28830 original size:30 final size:29
Alignment explanation
Indices: 28768--28837 Score: 86
Period size: 29 Copynumber: 2.4 Consensus size: 29
28758 ACTGAACCGT
****
28768 CAAATAAGCCCCTGAACTATTATTTCGGC
1 CAAATAAGCCCCTGAACTATTAAAAAGGC
*
28797 CAAATAAGCCCCTGAACTCTTAAAAAAGGC
1 CAAATAAGCCCCTGAACTATT-AAAAAGGC
28827 CAAATAAGCCC
1 CAAATAAGCCC
28838 TGTTGCCAAG
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
29 20 0.57
30 15 0.43
ACGTcount: A:0.39, C:0.29, G:0.13, T:0.20
Consensus pattern (29 bp):
CAAATAAGCCCCTGAACTATTAAAAAGGC
Found at i:31209 original size:149 final size:149
Alignment explanation
Indices: 30939--31233 Score: 581
Period size: 149 Copynumber: 2.0 Consensus size: 149
30929 AAGACCCTTC
30939 TTAACCACTGCAAGGACCAAGATCGATGTTCATGATGGAATTCTTAGCCTTGAATTTGATAGGGA
1 TTAACCACTGCAAGGACCAAGATCGATGTTCATGATGGAATTCTTAGCCTTGAATTTGATAGGGA
31004 AGTAATTAAATTTGATATGTACAAAGCGATGAAATTCCCTATTGAAGAACAATCTATTTTTGCCA
66 AGTAATTAAATTTGATATGTACAAAGCGATGAAATTCCCTATTGAAGAACAATCTATTTTTGCCA
31069 CTAATGAAGTTGATCTATT
131 CTAATGAAGTTGATCTATT
31088 TTAACCACTGCAAGGACCAAGATCGATGTTCATGATGGAATTCTTAGCCTTGAATTTGATAGGGA
1 TTAACCACTGCAAGGACCAAGATCGATGTTCATGATGGAATTCTTAGCCTTGAATTTGATAGGGA
*
31153 AGTAATTAAATTTGATATGTACAAAGTGATGAAATTCCCTATTGAAGAACAATCTATTTTTGCCA
66 AGTAATTAAATTTGATATGTACAAAGCGATGAAATTCCCTATTGAAGAACAATCTATTTTTGCCA
31218 CTAATGAAGTTGATCT
131 CTAATGAAGTTGATCT
31234 TCTTGTTGAA
Statistics
Matches: 145, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
149 145 1.00
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.33
Consensus pattern (149 bp):
TTAACCACTGCAAGGACCAAGATCGATGTTCATGATGGAATTCTTAGCCTTGAATTTGATAGGGA
AGTAATTAAATTTGATATGTACAAAGCGATGAAATTCCCTATTGAAGAACAATCTATTTTTGCCA
CTAATGAAGTTGATCTATT
Done.