Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007234.1 Corchorus capsularis cultivar CVL-1 contig07255, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  36140

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1236--1386
40
3.8
40
78
6
162
52
3
19
24
1.63
1355--1428
32
2.2
33
83
4
87
55
4
18
21
1.59
1216--1437
80
3.0
72
79
11
257
52
4
19
23
1.63
4553--4594
21
2.0
21
90
0
66
16
33
33
16
1.92
6396--6449
28
1.9
27
85
7
72
44
12
22
20
1.85
6403--6471
28
2.4
28
85
11
86
43
13
24
18
1.86
6578--6715
73
1.9
74
86
4
199
30
13
18
37
1.89
11117--11180
18
3.4
18
69
12
56
17
7
15
59
1.59
11103--11201
39
2.5
39
93
0
171
20
8
17
54
1.67
11103--11203
21
5.1
20
65
13
66
19
7
16
55
1.66
12731--12777
13
3.5
13
80
8
51
4
2
14
78
0.99
12731--12773
6
6.7
6
82
12
50
4
2
13
79
1.00
14205--14253
18
2.8
17
81
12
55
14
28
2
55
1.51
16260--16292
16
2.1
16
94
0
57
75
3
9
12
1.14
19722--19765
22
2.0
22
82
8
54
70
0
11
18
1.16
22943--22989
21
2.1
23
85
14
64
23
8
4
63
1.40
25730--25886
74
2.1
74
89
0
242
21
27
9
41
1.84
27417--27586
84
2.0
84
97
0
322
25
21
18
34
1.96
27860--27889
15
2.0
15
100
0
60
20
13
20
46
1.83
27966--28095
62
2.1
62
91
2
208
37
16
10
34
1.84
28077--28128
27
1.9
27
100
0
104
36
13
19
30
1.90
31997--32097
16
6.4
16
71
11
73
10
16
35
36
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31999--32085
31
2.7
33
84
5
108
12
14
34
37
1.85
32558--33001
166
2.7
165
87
2
602
29
13
16
40
1.86

Tables:   1

The End!