genome.fa.s7239.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007239.1 Corchorus capsularis cultivar CVL-1 contig07260, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66634

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5--65	32	1.9	33	90	6	99	14	34	32	18	1.91
116--232	26	4.4	26	77	9	103	35	1	8	53	1.42
189--232	15	3.2	15	72	24	51	36	0	9	54	1.32
174--222	11	4.1	11	76	19	53	34	2	8	55	1.41
242--300	25	2.4	25	86	5	86	38	0	25	35	1.56
4002--4055	27	2.0	27	100	0	108	29	3	18	48	1.65
5445--5484	18	2.2	18	86	4	53	45	5	20	30	1.72
8428--8690	96	2.8	95	74	7	248	33	26	8	30	1.87
9648--9684	2	18.0	2	94	5	65	48	0	2	48	1.15
9739--9777	20	1.9	21	89	5	62	2	43	5	48	1.38
10634--10672	20	2.0	20	90	10	62	2	38	17	41	1.64
10800--10824	13	1.9	13	100	0	50	68	24	8	0	1.16
13086--13274	95	2.0	95	89	2	290	34	20	14	30	1.93
13772--13807	2	18.5	2	88	5	56	47	0	2	50	1.15
21344--21466	46	2.7	44	81	6	138	49	1	0	47	1.16
24051--24236	37	5.1	36	91	1	255	27	23	9	39	1.85
24243--24615	37	10.2	37	87	3	495	22	28	7	41	1.81
24376--24510	18	7.3	18	65	14	78	21	31	5	41	1.77
24358--24418	19	3.3	19	68	13	54	21	34	8	36	1.83
24625--24737	36	3.2	35	76	10	104	29	11	10	48	1.73
24726--25047	41	8.3	40	74	13	291	24	20	10	44	1.83
24658--25032	41	10.0	36	73	12	206	25	18	10	45	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24771--25052	76	3.7	76	92	2	469	24	19	10	45	1.82
24730--25052	152	2.1	152	88	5	479	24	19	11	44	1.83
25065--25481	37	11.0	36	76	12	320	25	18	9	46	1.79
25306--25481	39	4.7	37	80	8	178	25	19	9	46	1.80
25305--25483	75	2.4	74	83	6	211	24	20	9	45	1.80
25454--25843	71	5.4	71	92	0	609	24	23	8	43	1.82
25813--26004	37	5.2	37	90	2	289	25	18	8	47	1.76
40456--40498	3	15.3	3	83	13	56	67	2	0	30	1.03
41418--41464	22	2.1	23	88	4	69	57	8	2	31	1.41
41444--41473	15	2.0	15	93	0	51	53	6	3	36	1.44
42737--42842	35	2.9	35	80	5	95	56	22	8	12	1.62
42761--42842	35	2.3	35	87	0	119	56	24	8	10	1.62
46139--46193	21	2.6	21	85	0	74	21	7	18	52	1.69
46174--46220	19	2.5	18	78	18	51	25	8	10	55	1.62
63475--63513	2	19.5	2	100	0	78	51	0	48	0	1.00
64268--64495	86	2.6	87	96	0	413	41	5	17	35	1.74

Tables:   1

The End!