Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01007242.1 Corchorus capsularis cultivar CVL-1 contig07263, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 23651
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.31
Found at i:293 original size:159 final size:158
Alignment explanation
Indices: 1--3323 Score: 3952
Period size: 159 Copynumber: 20.9 Consensus size: 158
* * * **
1 TGTGCAAAAACGAAGCTCTCTTTGAAGCCAAAATCCTCAACATTGCATGTTTATATGCAAAACAT
1 TGTGCAAAAACAAAGCTCTCCTTGAAGCCCAAATCCTCAACATTGCGCG-TTATATGCAAAACAT
* * * *
66 CGTTCTTAGCGAAACGCTCATTCCAGAAGCATTTTTTGCGCAACGCGAGCTCAAAAGTCTTGTGT
65 CGTTCTTATCGAAACGCTCATTCGAGAAGCATTTTTTGCGCAACGAGTGCTCAAAAGTCTTGTGT
131 CGGAGTGAGATGAGCTTGTTGGACAGCCC
130 CGGAGTGAGATGAGCTTGTTGGACAGCCC
* ** *
160 TGTGCAAAAACAAAGCTCTCCTTAAAGCCCAAATCCTCTGCATTGCGCGTTACTGTGCAAAACAT
1 TGTGCAAAAACAAAGCTCTCCTTGAAGCCCAAATCCTCAACATTGCGCGTTA-TATGCAAAACAT
* * * *
225 CGTTCTTATCGAAAGGCTCATTCGAGAAGCATTTTTTGTGCAACGAGTGCTAAAAAGTCTTGTAT
65 CGTTCTTATCGAAACGCTCATTCGAGAAGCATTTTTTGCGCAACGAGTGCTCAAAAGTCTTGTGT
*
290 CGGAGTGAGAAGAGCTTGTTGGACAGCCC
130 CGGAGTGAGATGAGCTTGTTGGACAGCCC
* * *
319 TGTGCAAAAACAAAGCTGTCCTTGAAGCCCAAAGCCTCAACATTGCGCGTTTGTATGCAAAACAT
1 TGTGCAAAAACAAAGCTCTCCTTGAAGCCCAAATCCTCAACATTGCGCG-TTATATGCAAAACAT
* * * * * *
384 GGTTCTTATCGAAATGCTCATTCCG-GAAGCGA-TTTTTGCGCAACAAGTGCTCAGAAGCCTTTT
65 CGTTCTTATCGAAACGCTCATT-CGAGAAGC-ATTTTTTGCGCAACGAGTGCTCAAAAGTCTTGT
* * ** *
447 GTTGGAGTAAGATGAGCTAATTTGACAGCCC
128 GTCGGAGTGAGATGAGCTTGTTGGACAGCCC
* * * **
478 TGTGCAAAAACGAAGCTCTCTTTGAAGCCAAAATCCTCAACATTGCATGTTTATATGCAAAACAT
1 TGTGCAAAAACAAAGCTCTCCTTGAAGCCCAAATCCTCAACATTGCGCG-TTATATGCAAAACAT
* * * *
543 CGTTCTTAGCGAAACGCTCATTCAAGAAGCA--TTTTGCGCAACGCGAGCTCAAAAGTCTTGTGT
65 CGTTCTTATCGAAACGCTCATTCGAGAAGCATTTTTTGCGCAACGAGTGCTCAAAAGTCTTGTGT
606 CGGAGTGAGATGAGCTTGTTGGACAGCCC
130 CGGAGTGAGATGAGCTTGTTGGACAGCCC
* * * * *
635 TGTGCAAAAACAAAGCTCTCCTTGAAGCCCAAAGCCTCAACATTGCGAGTTTGTGTGGAAAACAT
1 TGTGCAAAAACAAAGCTCTCCTTGAAGCCCAAATCCTCAACATTGCGCG-TTATATGCAAAACAT
* * * * * *
700 GGTTCTTATCGAAATGCTCATTCCG-GAAGCGA-TTTTTGCGCAACGAGTACTCAGAAGCCTTTT
65 CGTTCTTATCGAAACGCTCATT-CGAGAAGC-ATTTTTTGCGCAACGAGTGCTCAAAAGTCTTGT
* ** *
763 GTTGGAGTGAGATGAGCTAATTTGACAGCCC
128 GTCGGAGTGAGATGAGCTTGTTGGACAGCCC
* * * **
794 TGTGCAAAAACGAAGCTCTCTTTGAAGCCAAAATCCTCAACATTGCATGTTTATATGCAAAACAT
1 TGTGCAAAAACAAAGCTCTCCTTGAAGCCCAAATCCTCAACATTGCGCG-TTATATGCAAAACAT
* * * *
859 CGTTCTTAGCGAAACGCTCATTCCAGAAGCATTTTTTGCGCAACGCGAGCTCAAAAGTCTTGTGT
65 CGTTCTTATCGAAACGCTCATTCGAGAAGCATTTTTTGCGCAACGAGTGCTCAAAAGTCTTGTGT
924 CGGAGTGAGATGAGCTTGTTGGACAGCCC
130 CGGAGTGAGATGAGCTTGTTGGACAGCCC
* ** *
953 TGTGC-AAAACAAAGCTCTCCTTAAAGCCCAAATCCTCTGCATTGCGCGTTACTGTGCAAAACAT
1 TGTGCAAAAACAAAGCTCTCCTTGAAGCCCAAATCCTCAACATTGCGCGTTA-TATGCAAAACAT
* * * *
1017 CGTTCTTATCGAAAGGCTCATTCGAGAAGCATTTTTTGTGCAACGAGTGCTAAAAAGTCTTGTAT
65 CGTTCTTATCGAAACGCTCATTCGAGAAGCATTTTTTGCGCAACGAGTGCTCAAAAGTCTTGTGT
* *
1082 CGGAGTGAGAAGAGCTTGTTGGGCAGCCC
130 CGGAGTGAGATGAGCTTGTTGGACAGCCC
* * *
1111 TGTGCAAAAAC-AAGCTGTCCTTGAAGCCCAAAGCCTCAACATTGCGCGTTTGTATGCAAAACAT
1 TGTGCAAAAACAAAGCTCTCCTTGAAGCCCAAATCCTCAACATTGCGCG-TTATATGCAAAACAT
* * * * * *
1175 GGTTCTTATCGAAATGCTCATTCCG-GAAGCGA-TTTTTGCGCAACAAGTGCTCAGAAGCCTTTT
65 CGTTCTTATCGAAACGCTCATT-CGAGAAGC-ATTTTTTGCGCAACGAGTGCTCAAAAGTCTTGT
* * ** *
1238 GTTGGAGTAAGATGAGCTAATTTGACAGCCC
128 GTCGGAGTGAGATGAGCTTGTTGGACAGCCC
* * * **
1269 TGTGCAAAAACGAAGCTCTCTTTGAAGCCAAAATCCTCAACATTGCATGTTTATATGCAAAACAT
1 TGTGCAAAAACAAAGCTCTCCTTGAAGCCCAAATCCTCAACATTGCGCG-TTATATGCAAAACAT
* * * *
1334 CGTTCTTAGCGAAACGCTCATTCAAGAAGCATTTTTTGCGCAACGCGAGCTCAAAAGTCTTGTGT
65 CGTTCTTATCGAAACGCTCATTCGAGAAGCATTTTTTGCGCAACGAGTGCTCAAAAGTCTTGTGT
1399 CGGAGTGAGATGAGCTTGTTGGACAGCCC
130 CGGAGTGAGATGAGCTTGTTGGACAGCCC
* * * *
1428 TGTGCAAAAACAAAGCTCTCCTTGAAGCCCAAAGCCTCAACATTGCGAGTTTGTGTGCAAAACAT
1 TGTGCAAAAACAAAGCTCTCCTTGAAGCCCAAATCCTCAACATTGCGCG-TTATATGCAAAACAT
* * * *
1493 GGTTCTTATCGAAATGCTCATTCCAGAAGCATTTTTTGCGCAACGAGTGCTCAAAAGCCTTGTGT
65 CGTTCTTATCGAAACGCTCATTCGAGAAGCATTTTTTGCGCAACGAGTGCTCAAAAGTCTTGTGT
* *
1558 CAGAGTGAGATAAGCTTGTTGGACAGCCC
130 CGGAGTGAGATGAGCTTGTTGGACAGCCC
* * * * *
1587 TCTGCAAAAACAAAGCTCTCCTTGAAGCCCAAAGCCTCAACATTGCGAGTTTGTGTGCAAAACAT
1 TGTGCAAAAACAAAGCTCTCCTTGAAGCCCAAATCCTCAACATTGCGCG-TTATATGCAAAACAT
* * * * * *
1652 GGTTCTTATCGAAATGCTCATTCCG-GAAGCGA-TTTTTGCGCAACAAGTGCTCAGAAGCCTTTT
65 CGTTCTTATCGAAACGCTCATT-CGAGAAGC-ATTTTTTGCGCAACGAGTGCTCAAAAGTCTTGT
* ** *
1715 GTTGGAGTGAGATGAGCTAATTTGACAGCCC
128 GTCGGAGTGAGATGAGCTTGTTGGACAGCCC
* * * * **
1746 TGTGCAAAAACGAAGCTCTCTTTGAAGCCAAAATACTCAACATTGCATGTTTATATGCAAAACAT
1 TGTGCAAAAACAAAGCTCTCCTTGAAGCCCAAATCCTCAACATTGCGCG-TTATATGCAAAACAT
* * *
1811 CGTTCTTAGCGAAACGCTCATTCCAGAAGCATTTTTTGCGCAAC-ACGAGCTCAAAAGTCTTGTG
65 CGTTCTTATCGAAACGCTCATTCGAGAAGCATTTTTTGCGCAACGA-GTGCTCAAAAGTCTTGTG
1875 TCGGAGTGAGATGAGCTTGTTGGACAGCCC
129 TCGGAGTGAGATGAGCTTGTTGGACAGCCC
* ** *
1905 TGTGCAAAAACAAAGCTCTCCTTAAAGCCCAAATCCTCTGCATTGCGCGTTACTGTGCAAAACAT
1 TGTGCAAAAACAAAGCTCTCCTTGAAGCCCAAATCCTCAACATTGCGCGTTA-TATGCAAAACAT
* * * *
1970 CGTTCTTATCGAAAGGCTCATTCGAGAAGCATTTTTTTGTGCAACGAGTGCTAAAAAGTCTTGTA
65 CGTTCTTATCGAAACGCTCATTCGAGAAGCA-TTTTTTGCGCAACGAGTGCTCAAAAGTCTTGTG
*
2035 TCGGAGTGAGAAGAGCTTGTTGGACAGCCC
129 TCGGAGTGAGATGAGCTTGTTGGACAGCCC
* * * *
2065 TGTGCAAAAACAAAGCTGTCCTTGAAGCCCAAAGCCTCAAAATTGCGCGTTTGTATGCAAAACAT
1 TGTGCAAAAACAAAGCTCTCCTTGAAGCCCAAATCCTCAACATTGCGCG-TTATATGCAAAACAT
* * * * * *
2130 GGTTCTTATCGAAATGCTCATTCCG-GAAGCGA-TTTTTGCGCAACAAGTGCTCAGAAGCCTTTT
65 CGTTCTTATCGAAACGCTCATT-CGAGAAGC-ATTTTTTGCGCAACGAGTGCTCAAAAGTCTTGT
* * ** *
2193 GTTGGAGTAAGATGAGCTAATTTGACAGCCC
128 GTCGGAGTGAGATGAGCTTGTTGGACAGCCC
* * * **
2224 TGTGCAAAAACGAAGCTCTCTTTGAAGCCAAAATCCTCAACATTGCATGTTTATATGCAAAACAT
1 TGTGCAAAAACAAAGCTCTCCTTGAAGCCCAAATCCTCAACATTGCGCG-TTATATGCAAAACAT
* * * *
2289 CGTTCTTAGCGAAACGCTCATTCAAGAAGCATTTTTTGCGCAACGCGAGCTCAAAAGTCTTGTGT
65 CGTTCTTATCGAAACGCTCATTCGAGAAGCATTTTTTGCGCAACGAGTGCTCAAAAGTCTTGTGT
2354 CGGAGTGAGATGAGCTTGTTGGACAGCCC
130 CGGAGTGAGATGAGCTTGTTGGACAGCCC
* * * *
2383 TGTGCAAAAACAAAGCTCTCCTTGAAGCCCAAAGCCTCAACATTGCGAGTTTGTGTGCAAAACAT
1 TGTGCAAAAACAAAGCTCTCCTTGAAGCCCAAATCCTCAACATTGCGCG-TTATATGCAAAACAT
* * * * * *
2448 GGTTCTTATCGAAATGCTCATTCCG-GAAGCGA-TTTTTGCGCAACAAGTGCTCAGAAGCCTTTT
65 CGTTCTTATCGAAACGCTCATT-CGAGAAGC-ATTTTTTGCGCAACGAGTGCTCAAAAGTCTTGT
* * ** *
2511 GTTGGAGTAAGATGAGCTAATTTGACAGCCC
128 GTCGGAGTGAGATGAGCTTGTTGGACAGCCC
* * * **
2542 TGTG-ACAAAACGAAGCTCTCTTTGAAGCCAAAATCCTCAACATTGCATGTTTATATGCAAAACA
1 TGTGCA-AAAACAAAGCTCTCCTTGAAGCCCAAATCCTCAACATTGCGCG-TTATATGCAAAACA
* * * * * *
2606 TCGTTCTTAGCGAAACGCTCATTCCAGAAGCA-TTTTTGCGCAACGCGAGCTGAATAGTCTTGTG
64 TCGTTCTTATCGAAACGCTCATTCGAGAAGCATTTTTTGCGCAACGAGTGCTCAAAAGTCTTGTG
*
2670 TTGGAGTGAGATGAGCTTGTTGGACAGCCC
129 TCGGAGTGAGATGAGCTTGTTGGACAGCCC
* * * * * * *
2700 TGTGCAAAAACAAAGCTCTCCTTCAAGCCCAAAGCCTCAGCATTGTGCGTTTGTGTGCAAAATAT
1 TGTGCAAAAACAAAGCTCTCCTTGAAGCCCAAATCCTCAACATTGCGCG-TTATATGCAAAACAT
* * * *
2765 TGTTCTTATCGAAAGGCTCATTCCAGAAGCATTTTTTGCGCAACGAGTGCTCAAAAGCCTTGTGT
65 CGTTCTTATCGAAACGCTCATTCGAGAAGCATTTTTTGCGCAACGAGTGCTCAAAAGTCTTGTGT
* *
2830 CAGAGTGAGATTAGCTTGTTGGACAGCCC
130 CGGAGTGAGATGAGCTTGTTGGACAGCCC
** *
2859 TGTGCAAAAACAAAGCTCTCCTTGAAGCCCAAATCCTCTGCATTGCGCGTTTATGTGCAAAACAT
1 TGTGCAAAAACAAAGCTCTCCTTGAAGCCCAAATCCTCAACATTGCGCG-TTATATGCAAAACAT
* * * * * * *
2924 CGTTCGTATTGAAAGGCTCATTCCAGAAGCATTTTTTGTGCAACGAGTGCTGAAAAGTCTTGTAT
65 CGTTCTTATCGAAACGCTCATTCGAGAAGCATTTTTTGCGCAACGAGTGCTCAAAAGTCTTGTGT
* * *
2989 CGAAGTGAGAAGAGCTTGTTGGACAGCCA
130 CGGAGTGAGATGAGCTTGTTGGACAGCCC
* * * *
3018 TGTGCAAAAACAAAGCTCTCCTTGAAGCCCAAAGCCTCAACATTGCGAGTTTGTGTGCAAAACAT
1 TGTGCAAAAACAAAGCTCTCCTTGAAGCCCAAATCCTCAACATTGCGCG-TTATATGCAAAACAT
* * * * * * *
3083 GGTTCTTATCGAAATGCTCATTCCG-GAAGCGA-TTTTTGGGCAACAAGTGCTCAGAAGCCTTTT
65 CGTTCTTATCGAAACGCTCATT-CGAGAAGC-ATTTTTTGCGCAACGAGTGCTCAAAAGTCTTGT
* * ** *
3146 GTTGGAGTAAGATGAGCTAATTTGACAGCCC
128 GTCGGAGTGAGATGAGCTTGTTGGACAGCCC
* * * * **
3177 TGTGCAAAAACGAAGCTCTCTTTGAAGCCAAAACCCTCAACATTGCATGTTTATATGCAAAACAT
1 TGTGCAAAAACAAAGCTCTCCTTGAAGCCCAAATCCTCAACATTGCGCG-TTATATGCAAAACAT
* * * * *
3242 CGTTCTTAGCGAAACGCTCATTCCAAAAGCATTTTTTGCGCAACGCGAGCTCAAAAGTCTTGTGT
65 CGTTCTTATCGAAACGCTCATTCGAGAAGCATTTTTTGCGCAACGAGTGCTCAAAAGTCTTGTGT
3307 CGGAGTGAGATGAGCTT
130 CGGAGTGAGATGAGCTT
3324 TTTGAAGAAA
Statistics
Matches: 2699, Mismatches: 424, Indels: 82
0.84 0.13 0.03
Matches are distributed among these distances:
157 133 0.05
158 415 0.15
159 1999 0.74
160 146 0.05
161 6 0.00
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (158 bp):
TGTGCAAAAACAAAGCTCTCCTTGAAGCCCAAATCCTCAACATTGCGCGTTATATGCAAAACATC
GTTCTTATCGAAACGCTCATTCGAGAAGCATTTTTTGCGCAACGAGTGCTCAAAAGTCTTGTGTC
GGAGTGAGATGAGCTTGTTGGACAGCCC
Found at i:1803 original size:477 final size:477
Alignment explanation
Indices: 1--3323 Score: 4839
Period size: 477 Copynumber: 7.0 Consensus size: 477
* * * *
1 TGTGCAAAAACGAAGCTCTCTTTGAAGCCAAAATCCTCAACATTGC-ATGTTTATATGCAAAACA
1 TGTGCAAAAACAAAGCTCTCCTTGAAGCCCAAATCCTCAACATTGCGA-GTTTATGTGCAAAACA
* * * *
65 TCGTTCTTAGCGAAACGCTCATTCCAGAAGCATTTTTTGCGCAACGCGAGCTCAAAAGTCTTGTG
65 TCGTTCTTATCGAAAGGCTCATTCCAGAAGCATTTTTTGCGCAACGAGTGCTCAAAAGTCTTGTG
* * *
130 TCGGAGTGAGATGAGCTTGTTGGACAGCCCTGTGCAAAAACAAAGCTCTCCTTAAAGCCCAAATC
130 TCGGAGTGAGATAAGCTTGTTGGACAGCCCTGTGCAAAAACAAAGCTCTCCTTGAAGCCCAAAGC
** * ** * *
195 CTCTGCATTGCGCGTTACTGTGCAAAACATCGTTCTTATCGAAAGGCTCATT-CGAGAAGC-ATT
195 CTCAACATTGCGAGTTTGTGTGCAAAACATGGTTCTTATCGAAATGCTCATTCCG-GAAGCGA-T
* * * * * * * * * ** *
258 TTTTGTGCAACGAGTGCTAAAAAGTCTTGTATCGGAGTGAGAAGAGCTTGTTGGACAGCCCTGTG
258 TTTTGCGCAACAAGTGCTCAGAAGCCTTTTGTTGGAGTGAGATGAGCTAATTTGACAGCCCTGTG
* * * * * ** * *
323 CAAAAACAAAGCTGTCCTTGAAGCCCAAAGCCTCAACATTGCGCGTTTGTATGCAAAACATGGTT
323 CAAAAACGAAGCTCTCTTTGAAGCCAAAATCCTCAACATTGCATGTTTATATGCAAAACATCGTT
* * * ** * * * * *
388 CTTATCGAAATGCTCATTCCGGAAGCGA-TTTTTGCGCAACAAGTGCTCAGAAGCCTTTTGTTGG
388 CTTAGCGAAACGCTCATTCCAGAAGC-ATTTTTTGCGCAACGCGAGCTCAAAAGTCTTGTGTCGG
* ** *
452 AGTAAGATGAGCTAATTTGACAGCCC
452 AGTGAGATGAGCTTGTTGGACAGCCC
* * * *
478 TGTGCAAAAACGAAGCTCTCTTTGAAGCCAAAATCCTCAACATTGC-ATGTTTATATGCAAAACA
1 TGTGCAAAAACAAAGCTCTCCTTGAAGCCCAAATCCTCAACATTGCGA-GTTTATGTGCAAAACA
* * * * *
542 TCGTTCTTAGCGAAACGCTCATTCAAGAAGCA--TTTTGCGCAACGCGAGCTCAAAAGTCTTGTG
65 TCGTTCTTATCGAAAGGCTCATTCCAGAAGCATTTTTTGCGCAACGAGTGCTCAAAAGTCTTGTG
*
605 TCGGAGTGAGATGAGCTTGTTGGACAGCCCTGTGCAAAAACAAAGCTCTCCTTGAAGCCCAAAGC
130 TCGGAGTGAGATAAGCTTGTTGGACAGCCCTGTGCAAAAACAAAGCTCTCCTTGAAGCCCAAAGC
*
670 CTCAACATTGCGAGTTTGTGTGGAAAACATGGTTCTTATCGAAATGCTCATTCCGGAAGCGATTT
195 CTCAACATTGCGAGTTTGTGTGCAAAACATGGTTCTTATCGAAATGCTCATTCCGGAAGCGATTT
* *
735 TTGCGCAACGAGTACTCAGAAGCCTTTTGTTGGAGTGAGATGAGCTAATTTGACAGCCCTGTGCA
260 TTGCGCAACAAGTGCTCAGAAGCCTTTTGTTGGAGTGAGATGAGCTAATTTGACAGCCCTGTGCA
800 AAAACGAAGCTCTCTTTGAAGCCAAAATCCTCAACATTGCATGTTTATATGCAAAACATCGTTCT
325 AAAACGAAGCTCTCTTTGAAGCCAAAATCCTCAACATTGCATGTTTATATGCAAAACATCGTTCT
865 TAGCGAAACGCTCATTCCAGAAGCATTTTTTGCGCAACGCGAGCTCAAAAGTCTTGTGTCGGAGT
390 TAGCGAAACGCTCATTCCAGAAGCATTTTTTGCGCAACGCGAGCTCAAAAGTCTTGTGTCGGAGT
930 GAGATGAGCTTGTTGGACAGCCC
455 GAGATGAGCTTGTTGGACAGCCC
* ** *
953 TGTGC-AAAACAAAGCTCTCCTTAAAGCCCAAATCCTCTGCATTGCGCG-TTACTGTGCAAAACA
1 TGTGCAAAAACAAAGCTCTCCTTGAAGCCCAAATCCTCAACATTGCGAGTTTA-TGTGCAAAACA
* * * *
1016 TCGTTCTTATCGAAAGGCTCATTCGAGAAGCATTTTTTGTGCAACGAGTGCTAAAAAGTCTTGTA
65 TCGTTCTTATCGAAAGGCTCATTCCAGAAGCATTTTTTGCGCAACGAGTGCTCAAAAGTCTTGTG
* *
1081 TCGGAGTGAGA-AGAGCTTGTTGGGCAGCCCTGTGCAAAAAC-AAGCTGTCCTTGAAGCCCAAAG
130 TCGGAGTGAGATA-AGCTTGTTGGACAGCCCTGTGCAAAAACAAAGCTCTCCTTGAAGCCCAAAG
* *
1144 CCTCAACATTGCGCGTTTGTATGCAAAACATGGTTCTTATCGAAATGCTCATTCCGGAAGCGATT
194 CCTCAACATTGCGAGTTTGTGTGCAAAACATGGTTCTTATCGAAATGCTCATTCCGGAAGCGATT
*
1209 TTTGCGCAACAAGTGCTCAGAAGCCTTTTGTTGGAGTAAGATGAGCTAATTTGACAGCCCTGTGC
259 TTTGCGCAACAAGTGCTCAGAAGCCTTTTGTTGGAGTGAGATGAGCTAATTTGACAGCCCTGTGC
1274 AAAAACGAAGCTCTCTTTGAAGCCAAAATCCTCAACATTGCATGTTTATATGCAAAACATCGTTC
324 AAAAACGAAGCTCTCTTTGAAGCCAAAATCCTCAACATTGCATGTTTATATGCAAAACATCGTTC
*
1339 TTAGCGAAACGCTCATTCAAGAAGCATTTTTTGCGCAACGCGAGCTCAAAAGTCTTGTGTCGGAG
389 TTAGCGAAACGCTCATTCCAGAAGCATTTTTTGCGCAACGCGAGCTCAAAAGTCTTGTGTCGGAG
1404 TGAGATGAGCTTGTTGGACAGCCC
454 TGAGATGAGCTTGTTGGACAGCCC
* *
1428 TGTGCAAAAACAAAGCTCTCCTTGAAGCCCAAAGCCTCAACATTGCGAGTTTGTGTGCAAAACAT
1 TGTGCAAAAACAAAGCTCTCCTTGAAGCCCAAATCCTCAACATTGCGAGTTTATGTGCAAAACAT
* * *
1493 GGTTCTTATCGAAATGCTCATTCCAGAAGCATTTTTTGCGCAACGAGTGCTCAAAAGCCTTGTGT
66 CGTTCTTATCGAAAGGCTCATTCCAGAAGCATTTTTTGCGCAACGAGTGCTCAAAAGTCTTGTGT
* *
1558 CAGAGTGAGATAAGCTTGTTGGACAGCCCTCTGCAAAAACAAAGCTCTCCTTGAAGCCCAAAGCC
131 CGGAGTGAGATAAGCTTGTTGGACAGCCCTGTGCAAAAACAAAGCTCTCCTTGAAGCCCAAAGCC
1623 TCAACATTGCGAGTTTGTGTGCAAAACATGGTTCTTATCGAAATGCTCATTCCGGAAGCGATTTT
196 TCAACATTGCGAGTTTGTGTGCAAAACATGGTTCTTATCGAAATGCTCATTCCGGAAGCGATTTT
1688 TGCGCAACAAGTGCTCAGAAGCCTTTTGTTGGAGTGAGATGAGCTAATTTGACAGCCCTGTGCAA
261 TGCGCAACAAGTGCTCAGAAGCCTTTTGTTGGAGTGAGATGAGCTAATTTGACAGCCCTGTGCAA
*
1753 AAACGAAGCTCTCTTTGAAGCCAAAATACTCAACATTGCATGTTTATATGCAAAACATCGTTCTT
326 AAACGAAGCTCTCTTTGAAGCCAAAATCCTCAACATTGCATGTTTATATGCAAAACATCGTTCTT
*
1818 AGCGAAACGCTCATTCCAGAAGCATTTTTTGCGCAACACGAGCTCAAAAGTCTTGTGTCGGAGTG
391 AGCGAAACGCTCATTCCAGAAGCATTTTTTGCGCAACGCGAGCTCAAAAGTCTTGTGTCGGAGTG
1883 AGATGAGCTTGTTGGACAGCCC
456 AGATGAGCTTGTTGGACAGCCC
* ** *
1905 TGTGCAAAAACAAAGCTCTCCTTAAAGCCCAAATCCTCTGCATTGCGCG-TTACTGTGCAAAACA
1 TGTGCAAAAACAAAGCTCTCCTTGAAGCCCAAATCCTCAACATTGCGAGTTTA-TGTGCAAAACA
* * *
1969 TCGTTCTTATCGAAAGGCTCATTCGAGAAGCATTTTTTTGTGCAACGAGTGCTAAAAAGTCTTGT
65 TCGTTCTTATCGAAAGGCTCATTCCAGAAGCA-TTTTTTGCGCAACGAGTGCTCAAAAGTCTTGT
* *
2034 ATCGGAGTGAGA-AGAGCTTGTTGGACAGCCCTGTGCAAAAACAAAGCTGTCCTTGAAGCCCAAA
129 GTCGGAGTGAGATA-AGCTTGTTGGACAGCCCTGTGCAAAAACAAAGCTCTCCTTGAAGCCCAAA
* * *
2098 GCCTCAAAATTGCGCGTTTGTATGCAAAACATGGTTCTTATCGAAATGCTCATTCCGGAAGCGAT
193 GCCTCAACATTGCGAGTTTGTGTGCAAAACATGGTTCTTATCGAAATGCTCATTCCGGAAGCGAT
*
2163 TTTTGCGCAACAAGTGCTCAGAAGCCTTTTGTTGGAGTAAGATGAGCTAATTTGACAGCCCTGTG
258 TTTTGCGCAACAAGTGCTCAGAAGCCTTTTGTTGGAGTGAGATGAGCTAATTTGACAGCCCTGTG
2228 CAAAAACGAAGCTCTCTTTGAAGCCAAAATCCTCAACATTGCATGTTTATATGCAAAACATCGTT
323 CAAAAACGAAGCTCTCTTTGAAGCCAAAATCCTCAACATTGCATGTTTATATGCAAAACATCGTT
*
2293 CTTAGCGAAACGCTCATTCAAGAAGCATTTTTTGCGCAACGCGAGCTCAAAAGTCTTGTGTCGGA
388 CTTAGCGAAACGCTCATTCCAGAAGCATTTTTTGCGCAACGCGAGCTCAAAAGTCTTGTGTCGGA
2358 GTGAGATGAGCTTGTTGGACAGCCC
453 GTGAGATGAGCTTGTTGGACAGCCC
* *
2383 TGTGCAAAAACAAAGCTCTCCTTGAAGCCCAAAGCCTCAACATTGCGAGTTTGTGTGCAAAACAT
1 TGTGCAAAAACAAAGCTCTCCTTGAAGCCCAAATCCTCAACATTGCGAGTTTATGTGCAAAACAT
* * * * * * *
2448 GGTTCTTATCGAAATGCTCATTCCGGAAGCGA-TTTTTGCGCAACAAGTGCTCAGAAGCCTTTTG
66 CGTTCTTATCGAAAGGCTCATTCCAGAAGC-ATTTTTTGCGCAACGAGTGCTCAAAAGTCTTGTG
* * * ** * * * * *
2512 TTGGAGTAAGATGAGCTAATTTGACAGCCCTGTG-ACAAAACGAAGCTCTCTTTGAAGCCAAAAT
130 TCGGAGTGAGATAAGCTTGTTGGACAGCCCTGTGCA-AAAACAAAGCTCTCCTTGAAGCCCAAAG
* * * * * *
2576 CCTCAACATTGC-ATGTTTATATGCAAAACATCGTTCTTAGCGAAACGCTCATTCCAGAAGC-AT
194 CCTCAACATTGCGA-GTTTGTGTGCAAAACATGGTTCTTATCGAAATGCTCATTCCGGAAGCGAT
** * * * * ** *
2639 TTTTGCGCAACGCGAGCTGA-ATAGTCTTGTGTTGGAGTGAGATGAGCTTGTTGGACAGCCCTGT
258 TTTTGCGCAACAAGTGCTCAGA-AGCCTTTTGTTGGAGTGAGATGAGCTAATTTGACAGCCCTGT
* * * * * * *** * * * *
2703 GCAAAAACAAAGCTCTCCTTCAAGCCCAAAGCCTCAGCATTGTGCGTTTGTGTGCAAAATATTGT
322 GCAAAAACGAAGCTCTCTTTGAAGCCAAAATCCTCAACATTGCATGTTTATATGCAAAACATCGT
* * * * * *
2768 TCTTATCGAAAGGCTCATTCCAGAAGCATTTTTTGCGCAACGAGTGCTCAAAAGCCTTGTGTCAG
387 TCTTAGCGAAACGCTCATTCCAGAAGCATTTTTTGCGCAACGCGAGCTCAAAAGTCTTGTGTCGG
*
2833 AGTGAGATTAGCTTGTTGGACAGCCC
452 AGTGAGATGAGCTTGTTGGACAGCCC
** *
2859 TGTGCAAAAACAAAGCTCTCCTTGAAGCCCAAATCCTCTGCATTGCGCGTTTATGTGCAAAACAT
1 TGTGCAAAAACAAAGCTCTCCTTGAAGCCCAAATCCTCAACATTGCGAGTTTATGTGCAAAACAT
* * * * *
2924 CGTTCGTATTGAAAGGCTCATTCCAGAAGCATTTTTTGTGCAACGAGTGCTGAAAAGTCTTGTAT
66 CGTTCTTATCGAAAGGCTCATTCCAGAAGCATTTTTTGCGCAACGAGTGCTCAAAAGTCTTGTGT
* *
2989 CGAAGTGAGA-AGAGCTTGTTGGACAGCCATGTGCAAAAACAAAGCTCTCCTTGAAGCCCAAAGC
131 CGGAGTGAGATA-AGCTTGTTGGACAGCCCTGTGCAAAAACAAAGCTCTCCTTGAAGCCCAAAGC
3053 CTCAACATTGCGAGTTTGTGTGCAAAACATGGTTCTTATCGAAATGCTCATTCCGGAAGCGATTT
195 CTCAACATTGCGAGTTTGTGTGCAAAACATGGTTCTTATCGAAATGCTCATTCCGGAAGCGATTT
* *
3118 TTGGGCAACAAGTGCTCAGAAGCCTTTTGTTGGAGTAAGATGAGCTAATTTGACAGCCCTGTGCA
260 TTGCGCAACAAGTGCTCAGAAGCCTTTTGTTGGAGTGAGATGAGCTAATTTGACAGCCCTGTGCA
*
3183 AAAACGAAGCTCTCTTTGAAGCCAAAACCCTCAACATTGCATGTTTATATGCAAAACATCGTTCT
325 AAAACGAAGCTCTCTTTGAAGCCAAAATCCTCAACATTGCATGTTTATATGCAAAACATCGTTCT
*
3248 TAGCGAAACGCTCATTCCAAAAGCATTTTTTGCGCAACGCGAGCTCAAAAGTCTTGTGTCGGAGT
390 TAGCGAAACGCTCATTCCAGAAGCATTTTTTGCGCAACGCGAGCTCAAAAGTCTTGTGTCGGAGT
3313 GAGATGAGCTT
455 GAGATGAGCTT
3324 TTTGAAGAAA
Statistics
Matches: 2568, Mismatches: 251, Indels: 54
0.89 0.09 0.02
Matches are distributed among these distances:
473 3 0.00
474 75 0.03
475 637 0.25
476 614 0.24
477 788 0.31
478 448 0.17
479 3 0.00
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (477 bp):
TGTGCAAAAACAAAGCTCTCCTTGAAGCCCAAATCCTCAACATTGCGAGTTTATGTGCAAAACAT
CGTTCTTATCGAAAGGCTCATTCCAGAAGCATTTTTTGCGCAACGAGTGCTCAAAAGTCTTGTGT
CGGAGTGAGATAAGCTTGTTGGACAGCCCTGTGCAAAAACAAAGCTCTCCTTGAAGCCCAAAGCC
TCAACATTGCGAGTTTGTGTGCAAAACATGGTTCTTATCGAAATGCTCATTCCGGAAGCGATTTT
TGCGCAACAAGTGCTCAGAAGCCTTTTGTTGGAGTGAGATGAGCTAATTTGACAGCCCTGTGCAA
AAACGAAGCTCTCTTTGAAGCCAAAATCCTCAACATTGCATGTTTATATGCAAAACATCGTTCTT
AGCGAAACGCTCATTCCAGAAGCATTTTTTGCGCAACGCGAGCTCAAAAGTCTTGTGTCGGAGTG
AGATGAGCTTGTTGGACAGCCC
Found at i:6520 original size:2 final size:2
Alignment explanation
Indices: 6513--6548 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
6503 ATCCTCACAA
6513 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT GT
6549 ATACCTTGTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
GT
Found at i:7049 original size:108 final size:108
Alignment explanation
Indices: 6860--7076 Score: 434
Period size: 108 Copynumber: 2.0 Consensus size: 108
6850 ATCGCAATTC
6860 AACAATTCAAGAACCCTAGTACTACTTATCTCCAATTTTGTACTACTTGAATCTAATAGGGACTA
1 AACAATTCAAGAACCCTAGTACTACTTATCTCCAATTTTGTACTACTTGAATCTAATAGGGACTA
6925 AAATTATTCAAATTAATCCTTCAATTACAACAAAAGCAACCCA
66 AAATTATTCAAATTAATCCTTCAATTACAACAAAAGCAACCCA
6968 AACAATTCAAGAACCCTAGTACTACTTATCTCCAATTTTGTACTACTTGAATCTAATAGGGACTA
1 AACAATTCAAGAACCCTAGTACTACTTATCTCCAATTTTGTACTACTTGAATCTAATAGGGACTA
7033 AAATTATTCAAATTAATCCTTCAATTACAACAAAAGCAACCCA
66 AAATTATTCAAATTAATCCTTCAATTACAACAAAAGCAACCCA
7076 A
1 A
7077 GAACCTCAAA
Statistics
Matches: 109, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
108 109 1.00
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.29
Consensus pattern (108 bp):
AACAATTCAAGAACCCTAGTACTACTTATCTCCAATTTTGTACTACTTGAATCTAATAGGGACTA
AAATTATTCAAATTAATCCTTCAATTACAACAAAAGCAACCCA
Found at i:8265 original size:21 final size:21
Alignment explanation
Indices: 8207--8265 Score: 50
Period size: 21 Copynumber: 2.8 Consensus size: 21
8197 AACTTAGAAC
* *
8207 CGATTGGAATATTCCTAGAAT
1 CGATTGGAATATTCTTGGAAT
* *
8228 CAATTGTGAGA-A-GCTTGGAAT
1 CGATTG-GA-ATATTCTTGGAAT
8249 CGATTGGAATATTCTTG
1 CGATTGGAATATTCTTG
8266 CTCATAACTT
Statistics
Matches: 28, Mismatches: 6, Indels: 8
0.67 0.14 0.19
Matches are distributed among these distances:
19 1 0.04
20 3 0.11
21 20 0.71
22 3 0.11
23 1 0.04
ACGTcount: A:0.31, C:0.12, G:0.24, T:0.34
Consensus pattern (21 bp):
CGATTGGAATATTCTTGGAAT
Found at i:10489 original size:16 final size:16
Alignment explanation
Indices: 10468--10501 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
10458 AGCACTGAAT
10468 TTTGAGAGA-TTTGGTA
1 TTTGAGAGAGTTT-GTA
10484 TTTGAGAGAGTTTGTA
1 TTTGAGAGAGTTTGTA
10500 TT
1 TT
10502 CAACCGGTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 14 0.82
17 3 0.18
ACGTcount: A:0.24, C:0.00, G:0.29, T:0.47
Consensus pattern (16 bp):
TTTGAGAGAGTTTGTA
Found at i:14921 original size:13 final size:13
Alignment explanation
Indices: 14903--14928 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14893 CTTTTCCTTC
14903 TTCAGTCCATTTT
1 TTCAGTCCATTTT
14916 TTCAGTCCATTTT
1 TTCAGTCCATTTT
14929 CGTTGGATCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.23, G:0.08, T:0.54
Consensus pattern (13 bp):
TTCAGTCCATTTT
Found at i:19983 original size:159 final size:158
Alignment explanation
Indices: 19678--23651 Score: 4963
Period size: 159 Copynumber: 25.0 Consensus size: 158
19668 AGTGCATCCT
* * * *
19678 TAAGAACAATGTTTTGCACACAAACAAC-CAATGCTGAGGCTTTGGACTTGAAGGAGAGCTTT-T
1 TAAGAACGATGTTTTGCACACAAAC-ACGCAATGTTGAGGCTTTGGGCTTCAAGGAGAGCTTTGT
*
19741 TTTTGCACAGCGCTGTCCAACAAGCTCATCTCACTCCGACACAAGACTTTTGAGCACTCGTTGCG
65 TTTTGCACAGGGCTGTCCAACAAGCTCATCTCACTCCGACACAAGACTTTTGAGCACTCGTTGCG
* * *
19806 GAGAAAATGCTTCTGGAATGAGCGTTTCGC
130 CA-AAAATGCTTCTGGAATGAGCCTTTCGA
* * * * *
19836 TAATAACGATGTTTTGCATAGAAACATGCAATGTTGAGGACTTT-GGCTTCAAGGAGAGCTTCGT
1 TAAGAACGATGTTTTGCACACAAACACGCAATGTTGAGG-CTTTGGGCTTCAAGGAGAGCTTTGT
* * ** * * ** * * *
19900 TTTGGCACAGGGCTGTCAAATTAGCTCATCTTACACTAACAAAAGGCTTCTGAGCACTCGTTGCG
65 TTTTGCACAGGGCTGTCCAACAAGCTCATCTCACTCCGACACAAGACTTTTGAGCACTCGTTGCG
* *
19965 CAAAAATCGCTTCCGGAATGAGCATTTCGA
130 CAAAAAT-GCTTCTGGAATGAGCCTTTCGA
*
19995 TAAGAACCATGTTTTGCACACAAACACGCAATGTTGAGGCTTTCGGG-TTCAAGGAGAGCTTTGT
1 TAAGAACGATGTTTTGCACACAAACACGCAATGTTGAGGCTTT-GGGCTTCAAGGAGAGCTTTGT
* * * * *
20059 TTTTGCAGAGGGCTGTCCAACAAGCTCTTCTCACTCCGATACAAGAGTTTTGAGCACTCGTTGCA
65 TTTTGCACAGGGCTGTCCAACAAGCTCATCTCACTCCGACACAAGACTTTTGAGCACTCGTTGCG
20124 CAAAAAATGCTTCTGGAATGAGCCTTTCTGA
130 C-AAAAATGCTTCTGGAATGAGCCTTTC-GA
* * * *
20155 TTAGAACGATGTTTTGCACACATACGCGCAATGTTGAGGCTTTGGGGTTCAAGGAGAGCTTTGTT
1 TAAGAACGATGTTTTGCACACAAACACGCAATGTTGAGGCTTTGGGCTTCAAGGAGAGCTTTGTT
* * * *
20220 TTTGCACAGGGCTGTCCAACAAGCTCTTCTCACTCCGATACAAGAGTTTTGAGCACTCGTTGCAC
66 TTTGCACAGGGCTGTCCAACAAGCTCATCTCACTCCGACACAAGACTTTTGAGCACTCGTTGCGC
*
20285 AAAAAATGCTTATGGAATGAGCCTTTCGA
131 -AAAAATGCTTCTGGAATGAGCCTTTCGA
* * * *
20314 TAAGAACCATTTTTTGCACACAAACACGCAATGTTGAGGCTTTGTGCTTCAAGGAAAGCTTTGTT
1 TAAGAACGATGTTTTGCACACAAACACGCAATGTTGAGGCTTTGGGCTTCAAGGAGAGCTTTGTT
* * * * *
20379 TTTGCACAGGGCTGTCCAACAAGCTCTTCTCAGTCTGATACAAGACTTTTGAGCACTCGTTGCAC
66 TTTGCACAGGGCTGTCCAACAAGCTCATCTCACTCCGACACAAGACTTTTGAGCACTCGTTGCGC
*
20444 AAAAATTGCTTCCGGAATGAGCCTTTCGA
131 AAAAA-TGCTTCTGGAATGAGCCTTTCGA
* ** *
20473 TAAGAACGATGTTTTGCACACAAACGCGCAATGCAGAGGTTTTGGGCTTCAAGGAGAGCTTTGTT
1 TAAGAACGATGTTTTGCACACAAACACGCAATGTTGAGGCTTTGGGCTTCAAGGAGAGCTTTGTT
* * ** *
20538 TTTGCACAGGGCAGTCCAACAAGCTCATCTCACTCTGACACAAGACTTTTGAATACTCGTTGTGC
66 TTTGCACAGGGCTGTCCAACAAGCTCATCTCACTCCGACACAAGACTTTTGAGCACTCGTTGCGC
*
20603 AAAAAATGCTTCTGCAATGAGCCTTTCGA
131 -AAAAATGCTTCTGGAATGAGCCTTTCGA
* * *
20632 TAAGAA-GAATTTTTTGCACACAAACGCGCAATGCTGAGGCTTTGGGCTTCAAGGAGAGCTTTGT
1 TAAGAACG-ATGTTTTGCACACAAACACGCAATGTTGAGGCTTTGGGCTTCAAGGAGAGCTTTGT
* *
20696 TTTTGAACAGGGCTGTCCAACAAGCTCATCTCACTCCGACACAAGACTTTTGAGCACGCGTTGCG
65 TTTTGCACAGGGCTGTCCAACAAGCTCATCTCACTCCGACACAAGACTTTTGAGCACTCGTTGCG
* *
20761 CAAAAAATGCTTCTGGAATGAGCGTTTCGC
130 C-AAAAATGCTTCTGGAATGAGCCTTTCGA
* * * * * * * *
20791 TAAGAACGATGTTTTGCATAGAAACATGCAATGTTAAGGATTTTGGCTTCATGGAGAGCTTCGTT
1 TAAGAACGATGTTTTGCACACAAACACGCAATGTTGAGGCTTTGGGCTTCAAGGAGAGCTTTGTT
* * * * * * * * *
20856 TTTGCACAAGGCTGTCAAATAAGCTCATCTTACTCCAACAAAAGGCTTCTGGGCACTCGTTGCGC
66 TTTGCACAGGGCTGTCCAACAAGCTCATCTCACTCCGACACAAGACTTTTGAGCACTCGTTGCGC
* *
20921 AAAAATCGCTTCCGGAATGAGCATTTCGA
131 AAAAAT-GCTTCTGGAATGAGCCTTTCGA
* *
20950 TAAGAACCATGTTTTGCACACAAACGCGCAATGTTGAGGCTTTGGGCTTCAAGGAGAGCTTTGTT
1 TAAGAACGATGTTTTGCACACAAACACGCAATGTTGAGGCTTTGGGCTTCAAGGAGAGCTTTGTT
* * *
21015 TTTGCACAAGGCTGTCCAACAAGCTCTTCTCACTCCGATACAAGACTTTTGAGCACTCGTTGCGC
66 TTTGCACAGGGCTGTCCAACAAGCTCATCTCACTCCGACACAAGACTTTTGAGCACTCGTTGCGC
*
21080 AAAAAATGCTTCTGGAATGAGCCTTTCGC
131 -AAAAATGCTTCTGGAATGAGCCTTTCGA
* * * * *
21109 TAAGAACGATGTTTTGCATAGAAACATGCAATGTTGAGGATTTTGGCTTCAAGGAGAGCTTTGTT
1 TAAGAACGATGTTTTGCACACAAACACGCAATGTTGAGGCTTTGGGCTTCAAGGAGAGCTTTGTT
* * * * *
21174 TTCGCACAAGGCTGTCCAACAAGCTCATCTCACTCTGACACAAGGCTTTTGAGCATTCGTTGCGC
66 TTTGCACAGGGCTGTCCAACAAGCTCATCTCACTCCGACACAAGACTTTTGAGCACTCGTTGCGC
21239 AAAAAATGCTTCTGGAATGAGCCTTTCGA
131 -AAAAATGCTTCTGGAATGAGCCTTTCGA
* ** * * * * *
21268 TAAGAACAATGTTTTGCACACAAATGCGCAATGCTGATG-TTTGGGCTTGAAGGTGA-CCTTGTT
1 TAAGAACGATGTTTTGCACACAAACACGCAATGTTGAGGCTTTGGGCTTCAAGGAGAGCTTTGTT
* * *
21331 TTTGCACAGGGCTATCCAACAAGCTCATCTCACTTCGACACAAGACTTTTGAACACTCGTTGCGC
66 TTTGCACAGGGCTGTCCAACAAGCTCATCTCACTCCGACACAAGACTTTTGAGCACTCGTTGCGC
* * *
21396 AAAATTCGCTTCCGGAATGAGCATTTCGA
131 AAAAAT-GCTTCTGGAATGAGCCTTTCGA
* * * *
21425 TAGGAACCATGTTTTGCACACAAACGCGCAATGTTGAGGTTTTGGGCTTCAAGGAGAGCTTTGTT
1 TAAGAACGATGTTTTGCACACAAACACGCAATGTTGAGGCTTTGGGCTTCAAGGAGAGCTTTGTT
* * * * * *
21490 TTTGCACAAGGCGGTCCAACAAGCTAATCTCAATCTGACACAAGGCTTTTGAGCACTCGTTGCGC
66 TTTGCACAGGGCTGTCCAACAAGCTCATCTCACTCCGACACAAGACTTTTGAGCACTCGTTGCGC
21555 -AAAA---------AATGAGCCTTTCGA
131 AAAAATGCTTCTGGAATGAGCCTTTCGA
* * * *
21573 TAAGAACAATGTTTTGCACACAAACAAG-AATTGCTGAGGCTTTGGGCTTGAAGGAGAGCTTTGT
1 TAAGAACGATGTTTTGCACACAAACACGCAA-TGTTGAGGCTTTGGGCTTCAAGGAGAGCTTTGT
* * *
21637 TTTTGCACAGCGTTGTCCAACAAGCTCATCTCACTCCGACACAAGACTTTTGAGCACTCGTTGAG
65 TTTTGCACAGGGCTGTCCAACAAGCTCATCTCACTCCGACACAAGACTTTTGAGCACTCGTTG-C
* *
21702 GCAAAAATGCTTCTGGAATGAGCGTTTCGC
129 GCAAAAATGCTTCTGGAATGAGCCTTTCGA
* * * *
21732 TAAGAACGATGTTTTGCATAGAAACATGCAATGTTGAGG-TATTTGGCTTC-AGGAGAGCTTTTG
1 TAAGAACGATGTTTTGCACACAAACACGCAATGTTGAGGCT-TTGGGCTTCAAGGAGAGC-TTTG
* * * * * * * * *
21795 TTTTTGCACAAGGCTGTACAAATAAGCTCGATCTTACTCCAACAAAAGGCTTCTGGGCACTCGTT
64 TTTTTGCACAGGGCTGT-CCAACAAGCTC-ATCTCACTCCGACACAAGACTTTTGAGCACTCGTT
* *
21860 GCGCAAAAATCGCTTCCGGAATGAGCATTTCGA
127 GCGCAAAAAT-GCTTCTGGAATGAGCCTTTCGA
* *
21893 TAAGAACCATGTTTTGCACACAAACGCGCAATGTTGAGGCTTTGGGCTTCAAGGAGAGCTTTGTT
1 TAAGAACGATGTTTTGCACACAAACACGCAATGTTGAGGCTTTGGGCTTCAAGGAGAGCTTTGTT
* * * * *
21958 TTTGCACAAGGCTGTCCAACAAGCTCTTCTCAGTCCGATACAAGACTTTTGAGCACTCGTTGCAC
66 TTTGCACAGGGCTGTCCAACAAGCTCATCTCACTCCGACACAAGACTTTTGAGCACTCGTTGCGC
*
22023 AAAAAATGCTTATGGAATGAGCCTTTCGA
131 -AAAAATGCTTCTGGAATGAGCCTTTCGA
* * *
22052 TAAGAACCATGTTTTGCACACAAACACGCAATTTTGAGGAATTT-GGCTTCAAGGAGAGCTTTGT
1 TAAGAACGATGTTTTGCACACAAACACGCAATGTTGAGG-CTTTGGGCTTCAAGGAGAGCTTTGT
* *
22116 TTTTGCACAGGGCTGTCCAACAAGCTCATCTCACTCCGACACAAGACTTTTAAGCACTCGTTGCA
65 TTTTGCACAGGGCTGTCCAACAAGCTCATCTCACTCCGACACAAGACTTTTGAGCACTCGTTGCG
22181 CAAAAAATGCTTCTGGAATGAGCCTTTCGA
130 C-AAAAATGCTTCTGGAATGAGCCTTTCGA
*
22211 TAAGAACGATGTTTTGCACACAAACACGCAATGTTGAGGATTT-GGCTTCAAGGAGAGCTTTGTT
1 TAAGAACGATGTTTTGCACACAAACACGCAATGTTGAGGCTTTGGGCTTCAAGGAGAGCTTTGTT
*
22275 TTTGCACAAGGCTGTCCAACAAGCTCATCTCACTCCGACACAAGACTTTTGAGCACTCGTTGCGC
66 TTTGCACAGGGCTGTCCAACAAGCTCATCTCACTCCGACACAAGACTTTTGAGCACTCGTTGCGC
* *
22340 AAAAAGTGCTACTGGAATGAGCCTTTCGC
131 AAAAA-TGCTTCTGGAATGAGCCTTTCGA
* * * * * *
22369 TAAGAACGATGTTTTGCATAGAAACATGCAATGTTGAGGATTTTGGCTTCAAAGAGAGCTTTGTT
1 TAAGAACGATGTTTTGCACACAAACACGCAATGTTGAGGCTTTGGGCTTCAAGGAGAGCTTTGTT
* * * * * * * * *
22434 TTTGCACAAGGCTGTCAAATAAGCTCATCTTACTCCAACAAAAGGCTTCTGGGCACTCGTTGCGC
66 TTTGCACAGGGCTGTCCAACAAGCTCATCTCACTCCGACACAAGACTTTTGAGCACTCGTTGCGC
* * *
22499 AAAAATCGCTTCCGGAATGAGCATTTTGA
131 AAAAAT-GCTTCTGGAATGAGCCTTTCGA
* * *
22528 TTAGAACCATGTTTTGCACACAAACGCGCAATGTTGTAGGCTTTGGGCTTCAAGGAGAGCTTTGT
1 TAAGAACGATGTTTTGCACACAAACACGCAATGTTG-AGGCTTTGGGCTTCAAGGAGAGCTTTGT
* * *
22593 TTTTGTCACAGGGCTGTCCAAAAAGCTCATCTCACTCCGACACATGACTTTTGAGCATTCGTTGC
65 TTTTG-CACAGGGCTGTCCAACAAGCTCATCTCACTCCGACACAAGACTTTTGAGCACTCGTTGC
*
22658 GCAAGAAATGCTTCTGGAATGAGCCTTTCGC
129 GCAA-AAATGCTTCTGGAATGAGCCTTTCGA
* * * *
22689 TAAGAACGATGTTTTGCATAGAAACATGCAATGTTGAGGAATTT-GGCTTCAAGGAGAGCTTTGT
1 TAAGAACGATGTTTTGCACACAAACACGCAATGTTGAGG-CTTTGGGCTTCAAGGAGAGCTTTGT
* * * * * * * * *
22753 TTTTGCACAAGGCTGTCAAATAAGCTCATCTTACTCCAACAAAAGGCTTCTGAGCACTCGTTGCA
65 TTTTGCACAGGGCTGTCCAACAAGCTCATCTCACTCCGACACAAGACTTTTGAGCACTCGTTGCG
* * *
22818 CAAAAATCCATTCCGGAATGAGCATTTCGA
130 CAAAAATGC-TTCTGGAATGAGCCTTTCGA
* *
22848 TAAGAACCATGTTTTGCACACAAACGCGCAATGTTGAGGCTTTGGGCTTCAAGGAGAGCTTTGTT
1 TAAGAACGATGTTTTGCACACAAACACGCAATGTTGAGGCTTTGGGCTTCAAGGAGAGCTTTGTT
* ** * * * *
22913 GTTGCACAAAGCTGTCCAAAAAGCTCTTCTCACTCCGACACAAGACTTTTGAGCAGTCGTTGCAC
66 TTTGCACAGGGCTGTCCAACAAGCTCATCTCACTCCGACACAAGACTTTTGAGCACTCGTTGCGC
* *
22978 AAAAAATGATTCTGGAACGAGCCTTTCGA
131 -AAAAATGCTTCTGGAATGAGCCTTTCGA
* ** ** *
23007 TAAGAACGATGTTTTGCACACAAACAAGCAATGCAGAGTATTTGGGCTTCAAGAAGAGCTTTGTT
1 TAAGAACGATGTTTTGCACACAAACACGCAATGTTGAGGCTTTGGGCTTCAAGGAGAGCTTTGTT
* * ** * * * *
23072 TTTGCACAGGGCTATGCAACAAGCTCATCTCACTTTGACACAAGGCTTCTAAGCACTCGTTGCGT
66 TTTGCACAGGGCTGTCCAACAAGCTCATCTCACTCCGACACAAGACTTTTGAGCACTCGTTGCGC
* * *
23137 AAATATCGCTTCCGGAATGAGCATTTCGA
131 AAAAAT-GCTTCTGGAATGAGCCTTTCGA
* * *
23166 TAAGAACCATGTTTTGCACACAAACGCGCAATGTTGAGGCTTTGGGCTTCAAGGAGAGCTTTGTG
1 TAAGAACGATGTTTTGCACACAAACACGCAATGTTGAGGCTTTGGGCTTCAAGGAGAGCTTTGTT
* * * * * * *
23231 TTTGCACAAGACTGTCCAAAAAGCTCTTCTCACTCCGATACAAGACTTTTGAGCACTCGTTCCAC
66 TTTGCACAGGGCTGTCCAACAAGCTCATCTCACTCCGACACAAGACTTTTGAGCACTCGTTGCGC
*
23296 AAAAAATACTTCTGGAATGAGCCTTTCGA
131 -AAAAATGCTTCTGGAATGAGCCTTTCGA
* * ** *
23325 TAAGAACGATGTTTTGCACACAAACGCGCAACGCAGAGGATTTGGGCTTCAAGGAGAGCTTTGTT
1 TAAGAACGATGTTTTGCACACAAACACGCAATGTTGAGGCTTTGGGCTTCAAGGAGAGCTTTGTT
*
23390 TTTGCACAGGGCTGTCCAACCAGCTCATCTCACTCCGACACAAGACTTTTGAGCACTCGTTGCGC
66 TTTGCACAGGGCTGTCCAACAAGCTCATCTCACTCCGACACAAGACTTTTGAGCACTCGTTGCGC
* * *
23455 AAAAAGTGCTACTGGAGTGAGCCTTTCGC
131 AAAAA-TGCTTCTGGAATGAGCCTTTCGA
* * * * *
23484 TAAGAACGATGTTTTGCACAGAAACATGCATTGTTGTAGGATTTTGGCGTTCAAGGAGAGCTTTG
1 TAAGAACGATGTTTTGCACACAAACACGCAATGTTG-AGGCTTTGGGC-TTCAAGGAGAGCTTTG
* * * * * * * *
23549 TTTTTGCACAAGGCTGTCAAATAAGCTCATCT-ACTCCAACAAAAGGCTTCTGGGCACTCGTTGC
64 TTTTTGCACAGGGCTGTCCAACAAGCTCATCTCACTCCGACACAAGACTTTTGAGCACTCGTTGC
* *
23613 GCAAAAAATCGCTTCCGGAATGAGCATTTCGA
129 GC-AAAAAT-GCTTCTGGAATGAGCCTTTCGA
23645 TAAGAAC
1 TAAGAAC
Statistics
Matches: 3298, Mismatches: 461, Indels: 111
0.85 0.12 0.03
Matches are distributed among these distances:
147 2 0.00
148 122 0.04
149 2 0.00
150 4 0.00
156 5 0.00
157 123 0.04
158 275 0.08
159 2149 0.65
160 315 0.10
161 288 0.09
162 13 0.00
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (158 bp):
TAAGAACGATGTTTTGCACACAAACACGCAATGTTGAGGCTTTGGGCTTCAAGGAGAGCTTTGTT
TTTGCACAGGGCTGTCCAACAAGCTCATCTCACTCCGACACAAGACTTTTGAGCACTCGTTGCGC
AAAAATGCTTCTGGAATGAGCCTTTCGA
Done.