Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007245.1 Corchorus capsularis cultivar CVL-1 contig07266, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28129

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8--2610
860
3.0
862
97
0
4856
35
19
15
29
1.93
4102--4164
30
2.1
30
88
5
92
17
33
17
31
1.93
6103--6134
12
2.7
12
90
0
55
9
25
43
21
1.82
7179--7208
13
2.3
13
94
0
51
40
10
33
16
1.82
8972--8997
1
26.0
1
100
0
52
100
0
0
0
0.00
9792--9827
18
1.9
18
88
5
54
50
0
22
27
1.50
9781--9838
30
1.9
30
82
6
73
44
3
18
32
1.67
12259--12311
27
2.2
23
81
18
63
35
22
16
24
1.95
15799--15872
33
2.2
33
92
4
123
36
6
18
37
1.78
15798--15883
33
2.6
32
81
7
109
33
6
19
39
1.79
18818--18851
8
4.1
8
85
7
50
58
14
2
23
1.50
18929--18958
9
3.2
9
90
9
51
76
0
0
23
0.78
18929--18957
5
6.0
5
92
8
51
79
0
0
20
0.74
21139--21245
33
3.2
32
78
6
108
8
30
38
22
1.84
26137--26245
33
3.3
33
96
0
191
44
18
10
26
1.81
26137--26278
66
2.2
66
83
2
169
42
19
9
28
1.82
26236--26375
33
4.2
33
75
5
113
42
20
10
27
1.84
27876--27909
10
3.5
10
84
8
52
17
0
0
82
0.67
27982--28015
8
4.1
8
85
7
50
23
2
14
58
1.50

Tables:   1

The End!