Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007246.1 Corchorus capsularis cultivar CVL-1 contig07267, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9788

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2--908
427
2.1
428
87
1
1327
27
21
21
29
1.99
877--937
30
2.0
30
90
6
97
31
26
21
21
1.98
605--1508
300
3.0
299
90
1
1409
29
22
21
27
1.99
904--2228
727
1.8
728
92
1
2228
29
21
21
27
1.99
1904--1963
30
2.0
30
83
6
77
33
25
23
18
1.97
1634--2834
301
4.0
300
94
0
2055
29
21
21
27
1.99
1634--3984
601
4.0
601
71
15
2150
29
21
21
28
1.98
2535--3687
427
2.7
425
90
1
1817
28
21
21
29
1.98
3656--3716
30
2.0
30
90
6
97
31
26
21
21
1.98
3387--3987
300
2.0
296
91
1
979
29
21
21
27
1.99
3779--4202
158
2.7
156
78
4
431
27
21
22
28
1.99
4095--4306
111
1.9
111
83
1
273
28
22
21
27
1.99
3959--4683
270
2.7
267
87
3
997
27
22
22
28
1.99
4386--4588
111
1.8
111
83
2
264
29
23
20
26
1.99
4399--5429
300
3.4
300
73
13
962
28
22
21
28
1.99
4807--5304
159
3.1
158
74
8
470
29
22
20
27
1.98

Tables:   1

The End!