Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007251.1 Corchorus capsularis cultivar CVL-1 contig07272, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24758

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1771--1799
2
14.5
2
100
0
58
48
0
0
51
1.00
2944--3043
31
3.3
30
81
5
121
35
16
29
20
1.94
2960--3043
29
2.8
30
87
3
116
33
16
29
20
1.95
5211--5267
16
3.6
16
71
4
53
36
31
21
10
1.87
5694--5862
78
2.2
78
87
0
248
49
1
13
36
1.50
6151--6221
37
1.9
37
88
0
106
36
18
7
38
1.78
7389--7459
29
2.4
28
86
4
97
36
19
9
33
1.85
8470--8540
37
1.9
37
91
0
115
35
16
9
38
1.82
9755--9783
2
15.0
2
92
7
51
48
0
0
51
1.00
9818--9851
15
2.2
16
89
5
52
20
11
29
38
1.88
11128--11167
19
2.0
20
90
4
64
55
22
7
15
1.65
13481--13520
19
2.1
19
95
0
71
32
15
12
40
1.84
19316--19488
31
5.4
31
77
6
175
18
21
26
34
1.96
19296--19441
62
2.4
62
82
4
163
17
22
24
34
1.96
20234--20269
11
3.3
11
84
0
54
0
5
19
75
1.00
20217--20264
16
3.1
16
77
14
55
0
10
18
70
1.15

Tables:   1

The End!