Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007253.1 Corchorus capsularis cultivar CVL-1 contig07274, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18568

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8799--8951
43
3.7
41
83
9
193
32
15
24
28
1.95
8930--8989
19
3.2
19
95
0
102
40
6
28
25
1.80
8897--9051
81
1.9
80
88
3
231
32
11
28
27
1.92
9016--9053
19
2.0
19
100
0
76
31
5
31
31
1.80
8949--9096
62
2.4
62
98
0
287
31
10
29
29
1.91
9035--9139
43
2.4
43
100
0
210
28
12
28
30
1.93
8973--9227
105
2.4
105
96
0
458
29
14
27
29
1.95
9078--9202
62
2.0
62
98
0
241
29
12
28
30
1.92
9121--9158
19
2.0
19
100
0
76
31
5
31
31
1.80
9140--9227
42
2.1
43
91
2
142
29
18
26
26
1.98
9223--9305
38
2.2
38
88
0
121
28
21
18
31
1.97
10908--10960
21
2.6
21
84
3
63
9
32
32
26
1.88
12020--12050
15
2.1
15
93
0
53
25
0
0
74
0.82
14455--14482
13
2.2
13
100
0
56
14
17
46
21
1.84
14655--14693
20
2.0
20
85
5
53
28
23
5
43
1.75
18390--18423
13
2.6
13
95
0
59
23
8
8
58
1.56
18420--18446
6
4.5
6
100
0
54
29
0
14
55
1.40

Tables:   1

The End!