genome.fa.s7254.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007254.1 Corchorus capsularis cultivar CVL-1 contig07275, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30803

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4757--4789	6	5.5	6	100	0	66	30	0	15	54	1.41
9077--9573	49	10.1	49	87	2	694	23	31	14	30	1.94
13494--13544	14	3.6	14	72	17	52	43	7	13	35	1.73
14217--14288	7	10.3	7	78	13	51	81	4	9	4	0.94
14237--14288	19	2.8	18	88	5	68	86	5	5	1	0.76
14239--14280	12	3.3	13	90	9	61	88	4	4	2	0.71
14247--14288	12	3.5	12	90	6	59	90	7	2	0	0.53
15319--15462	38	3.9	38	90	2	222	33	21	17	27	1.96
15442--15486	22	2.0	24	86	8	67	33	15	11	40	1.83
15464--15638	38	4.6	38	84	2	217	33	20	17	29	1.95
15640--15772	38	3.5	38	84	0	176	31	21	17	30	1.96
15801--16022	15	13.5	15	75	14	174	33	22	3	40	1.71
15801--15959	34	4.8	33	76	11	146	32	23	3	40	1.72
15801--16027	8	27.6	8	67	17	101	34	22	3	39	1.72
15799--16022	66	3.4	66	81	7	226	33	22	3	39	1.72
15801--16025	49	4.5	48	81	10	224	34	22	3	39	1.72
16028--16252	48	4.7	47	85	3	272	20	27	16	35	1.94
16227--16333	47	2.3	47	82	9	146	22	21	19	36	1.95
16412--16504	27	3.2	27	66	21	71	25	24	17	32	1.97
16368--16698	60	5.4	60	86	5	407	25	26	15	32	1.96
16368--16698	121	2.7	120	86	3	466	25	26	15	32	1.96
16671--16738	34	2.0	34	91	0	109	27	25	17	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16705--16854	62	2.4	61	81	4	174	26	26	16	31	1.96
16856--17031	62	2.9	61	85	5	255	26	26	16	30	1.97
20782--21130	49	7.1	49	89	2	470	22	32	14	30	1.93
21809--22201	65	5.8	65	72	12	228	21	21	3	54	1.58
21811--22281	32	13.9	32	72	15	292	21	21	3	54	1.59
21811--22137	97	3.3	97	77	12	317	20	21	2	55	1.56
21876--21961	16	5.4	16	68	21	56	17	19	3	59	1.52
21812--22281	72	6.9	65	75	13	287	21	21	3	54	1.59
21772--22201	170	2.5	168	90	2	671	21	20	3	55	1.57
22111--22967	40	22.6	40	71	14	539	21	22	4	51	1.65
22092--22859	72	10.3	72	71	13	459	21	22	4	52	1.64
21980--22218	104	2.4	103	81	6	276	20	21	3	53	1.60
22150--22201	16	3.2	16	76	10	61	17	23	5	53	1.64
22080--22553	144	3.2	142	88	6	637	22	21	3	51	1.63
22227--22289	32	2.0	32	90	0	99	26	15	3	53	1.57
22114--22594	151	3.2	151	90	4	701	22	22	3	51	1.64
22379--22586	111	1.9	111	82	6	260	21	23	3	51	1.63
22637--22691	16	3.4	16	78	14	67	18	23	3	54	1.59
22581--22772	106	1.8	106	84	4	262	19	25	3	51	1.63
22544--22811	146	1.8	145	80	5	326	19	24	4	51	1.66
28505--28571	26	2.5	27	73	4	64	41	26	11	19	1.86

Tables:   1

The End!