Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007258.1 Corchorus capsularis cultivar CVL-1 contig07279, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41680

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3192--3217
10
2.6
10
100
0
52
50
19
7
23
1.73
4146--4175
6
5.0
6
100
0
60
33
0
16
50
1.46
10842--10882
16
2.6
16
92
0
64
24
43
26
4
1.74
15703--16174
48
10.8
48
74
13
242
15
26
19
37
1.92
15800--16506
40
17.1
40
78
7
714
14
26
20
38
1.91
15809--16509
41
16.9
40
78
8
686
14
26
20
38
1.91
15752--16506
169
4.5
167
85
6
864
14
26
20
38
1.92
16557--16890
50
6.8
48
84
7
393
16
29
17
36
1.92
16557--16890
99
3.4
98
84
5
431
16
29
17
36
1.92
16557--16890
149
2.2
148
85
4
449
16
29
17
36
1.92
18622--18646
1
25.0
1
100
0
50
0
100
0
0
0.00
27811--27878
24
2.8
24
81
2
82
60
8
26
4
1.46
30952--31132
36
5.1
36
88
5
255
29
22
8
39
1.84
31073--31134
32
1.9
32
93
0
106
32
22
8
37
1.83
31161--31295
71
1.9
73
86
6
195
23
12
13
50
1.75
31161--31297
36
3.8
35
85
6
168
24
13
13
49
1.77
31301--31477
41
4.5
39
92
4
229
23
17
13
45
1.84
31301--31477
78
2.3
80
84
11
242
23
17
13
45
1.84
31477--32373
36
25.4
36
77
8
654
26
18
10
44
1.82
31499--32370
107
8.2
106
76
11
647
26
18
10
44
1.82
31852--32173
166
1.9
165
83
6
411
27
18
9
44
1.81
36193--36223
2
15.5
2
100
0
62
51
0
0
48
1.00

Tables:   1

The End!