Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01007259.1 Corchorus capsularis cultivar CVL-1 contig07280, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 10370
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.30
Found at i:387 original size:43 final size:41
Alignment explanation
Indices: 335--570 Score: 222
Period size: 43 Copynumber: 5.5 Consensus size: 41
325 TTAGTAAAGT
*
335 GTAAAATAGTAATCAGTAAAAAGTAAGAAGGTAATCAACAAGA
1 GTAAAA-AGTAATCAGTAAAAAGTAA-AAGGTAATCAGCAAGA
* *
378 GTAAAATAGTAGTCAGTAAAAAGTAAATA-GTAATCAGTAAGA
1 GTAAAA-AGTAATCAGTAAAAAGTAAA-AGGTAATCAGCAAGA
* * * *
420 GTAAAAAAGTAATAAGTAAGAAGTAAAAGGAAATCAGTAAGA
1 GT-AAAAAGTAATCAGTAAAAAGTAAAAGGTAATCAGCAAGA
* * * *
462 CTAAAAAGGTGATCAGTAAAGAGTAAAAAGCTAATCAGCAAGAA
1 GTAAAAA-GTAATCAGTAAAAAGT-AAAAGGTAATCAGCAAG-A
* * * * *
506 GTAAAAAGGTAATCAGTAAATAGCAAAAGGCAATCAGTAAAAA
1 GTAAAAA-GTAATCAGTAAAAAGTAAAAGGTAATCAG-CAAGA
549 GTAAAAGAGTAATCAGTAAAAA
1 GTAAAA-AGTAATCAGTAAAAA
571 AGGAGCAGAA
Statistics
Matches: 161, Mismatches: 24, Indels: 16
0.80 0.12 0.08
Matches are distributed among these distances:
41 6 0.04
42 56 0.35
43 75 0.47
44 24 0.15
ACGTcount: A:0.56, C:0.07, G:0.19, T:0.18
Consensus pattern (41 bp):
GTAAAAAGTAATCAGTAAAAAGTAAAAGGTAATCAGCAAGA
Found at i:407 original size:21 final size:21
Alignment explanation
Indices: 338--641 Score: 154
Period size: 21 Copynumber: 13.9 Consensus size: 21
328 GTAAAGTGTA
338 AAATAGTAATCAGTAAAAAGT
1 AAATAGTAATCAGTAAAAAGT
*
359 AAGA-AGGTAATCA--ACAAGAGT
1 AA-ATA-GTAATCAGTA-AAAAGT
*
380 AAAATAGTAGTCAGTAAAAAGT
1 -AAATAGTAATCAGTAAAAAGT
*
402 AAATAGTAATCAGT-AAGAGT
1 AAATAGTAATCAGTAAAAAGT
* * *
422 AAAAAAGTAATAAGTAAGAAGT
1 -AAATAGTAATCAGTAAAAAGT
* * *
444 AAA-AGGAAATCAGT-AAGACT
1 AAATA-GTAATCAGTAAAAAGT
* * *
464 AAAAAGGTGATCAGTAAAGAGT
1 AAATA-GTAATCAGTAAAAAGT
* * *
486 AAAAAGCTAATCAGCAAGAAGT
1 AAATAG-TAATCAGTAAAAAGT
* * *
508 AAAAAGGTAATCAGTAAATAGC
1 AAATA-GTAATCAGTAAAAAGT
*
530 AAA-AGGCAATCAGTAAAAAGT
1 AAATA-GTAATCAGTAAAAAGT
* *
551 AAAAGAGTAATCAGTAAAAAAGGAGCAGA
1 -AAATAGTAATCAGT---AAA--A--AGT
580 AAATAGTAATCAGTAAAAGAGT
1 AAATAGTAATCAGTAAAA-AGT
* *
602 AAAATAGTAATCAATACAAAGT
1 -AAATAGTAATCAGTAAAAAGT
* *
624 AAAGAATAATCAGTAAAA
1 AAATAGTAATCAGTAAAA
642 TGGTGATGCT
Statistics
Matches: 220, Mismatches: 39, Indels: 48
0.72 0.13 0.16
Matches are distributed among these distances:
20 13 0.06
21 89 0.40
22 76 0.35
23 20 0.09
25 6 0.03
27 1 0.00
28 13 0.06
29 2 0.01
ACGTcount: A:0.56, C:0.07, G:0.19, T:0.18
Consensus pattern (21 bp):
AAATAGTAATCAGTAAAAAGT
Found at i:566 original size:15 final size:15
Alignment explanation
Indices: 548--603 Score: 62
Period size: 15 Copynumber: 3.9 Consensus size: 15
538 ATCAGTAAAA
548 AGTAAAAGAGTAATC
1 AGTAAAAGAGTAATC
* * *
563 AGTAAAAAAG-GAGC
1 AGTAAAAGAGTAATC
*
577 AG-AAAATAGTAATC
1 AGTAAAAGAGTAATC
591 AGTAAAAGAGTAA
1 AGTAAAAGAGTAA
604 AATAGTAATC
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
13 6 0.19
14 8 0.25
15 18 0.56
ACGTcount: A:0.57, C:0.05, G:0.21, T:0.16
Consensus pattern (15 bp):
AGTAAAAGAGTAATC
Found at i:3385 original size:14 final size:14
Alignment explanation
Indices: 3365--3400 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
3355 CAAAAAAATT
3365 GTTTTCAAGAA-GA
1 GTTTTCAAGAATGA
3378 GATTTTCAAGAATGA
1 G-TTTTCAAGAATGA
3393 GTTTTCAA
1 GTTTTCAA
3401 AAAGGTTTCA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 1 0.05
14 17 0.81
15 3 0.14
ACGTcount: A:0.36, C:0.08, G:0.19, T:0.36
Consensus pattern (14 bp):
GTTTTCAAGAATGA
Found at i:5075 original size:51 final size:50
Alignment explanation
Indices: 4967--5085 Score: 157
Period size: 50 Copynumber: 2.4 Consensus size: 50
4957 TTTGTAAGTC
* * * *
4967 CAAAATTCGATTTTCAAAATAAGGTTGCATTTCATTAGTGAGTCCAATAT
1 CAAAATTCGATTTTCAAAATAAGATTACATTCCATTAGTGAGTCCAAGAT
* * *
5017 CAAAATTCGATTTTCGAGATAAGATTACATTCCATTTTGTGAGTCCAAGAT
1 CAAAATTCGATTTTCAAAATAAGATTACATTCCA-TTAGTGAGTCCAAGAT
*
5068 CAAAATTCGCTTTTCAAA
1 CAAAATTCGATTTTCAAA
5086 GGGCATTTTA
Statistics
Matches: 58, Mismatches: 10, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
50 29 0.50
51 29 0.50
ACGTcount: A:0.35, C:0.16, G:0.13, T:0.35
Consensus pattern (50 bp):
CAAAATTCGATTTTCAAAATAAGATTACATTCCATTAGTGAGTCCAAGAT
Found at i:5592 original size:69 final size:69
Alignment explanation
Indices: 5516--5859 Score: 427
Period size: 69 Copynumber: 5.0 Consensus size: 69
5506 TTCCATCTGT
* *
5516 CAAACTCGTTTCCACACGAGTCAGTTCAAGCTTTGGTTCCATCCAAGTATCAGGGGCTTTTCCAT
1 CAAACTCGTTTCCACACGAGTCAGTTCAAGCTTTGGTTCCATCCAAGCAGCAGGGGCTTTTCCAT
5581 AAGC
66 AAGC
* * **
5585 CAAACTCGTTTCCATACGAGTCAGTTCAAGCTTTGGTTCCATCTGAA-CATTTAGGGGCTTTTCC
1 CAAACTCGTTTCCACACGAGTCAGTTCAAGCTTTGGTTCCATC-CAAGCA-GCAGGGGCTTTTCC
*
5649 ACAAGC
64 ATAAGC
* *
5655 CAAACTCGTTTCCATACGAGTCAGTTCAAG-TCTTGGTTCCATCCAAGCAGCAGCGGCTTTTCCA
1 CAAACTCGTTTCCACACGAGTCAGTTCAAGCT-TTGGTTCCATCCAAGCAGCAGGGGCTTTTCCA
*
5719 CAAGC
65 TAAGC
* * * *
5724 CAAACTCGTTTCCACACGAGTCAATT-TAGCCTTGGTTCCATCCAAGCAGCAAGGGCTTTTCCAC
1 CAAACTCGTTTCCACACGAGTCAGTTCAAGCTTTGGTTCCATCCAAGCAGCAGGGGCTTTTCCA-
5788 T-AGC
65 TAAGC
* * *
5792 CAAACTCGTTTCCATC-TGAGTCAGTT-TAGCCTTGGTTCCATCCAAGCA--A-GGGCTTTTCCA
1 CAAACTCGTTTCCA-CACGAGTCAGTTCAAGCTTTGGTTCCATCCAAGCAGCAGGGGCTTTTCCA
5852 TAAGC
65 TAAGC
5857 CAA
1 CAA
5860 GTTCATTTCC
Statistics
Matches: 249, Mismatches: 18, Indels: 20
0.87 0.06 0.07
Matches are distributed among these distances:
64 1 0.00
65 17 0.07
66 1 0.00
68 79 0.32
69 88 0.35
70 63 0.25
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.28
Consensus pattern (69 bp):
CAAACTCGTTTCCACACGAGTCAGTTCAAGCTTTGGTTCCATCCAAGCAGCAGGGGCTTTTCCAT
AAGC
Found at i:5665 original size:139 final size:135
Alignment explanation
Indices: 5516--5882 Score: 429
Period size: 139 Copynumber: 2.7 Consensus size: 135
5506 TTCCATCTGT
5516 CAAACTCGTTTCCACACGAGTCAGTTCAAGCTTTGGTTCCATCCAAGTATCAGGGGCTTTTCCAT
1 CAAACTCGTTTCCACACGAGTCAGTTCAAGCTTTGGTTCCATCCAAG-A-CAGGGGCTTTTCCAT
* * ** *
5581 AAGCCAAACTCGTTTCCATACGAGTCAGTTCAAGCTTTGGTTCCATCTGAA-CATTTAGGGGCTT
64 AAGCCAAACTCGTTTCCATACGAGTCAGTT-AAGCCTTGGTTCCATC-CAAGCA-GCAAGGGCTT
5645 TTCCACAAGC
126 TTCCACAAGC
* *
5655 CAAACTCGTTTCCATACGAGTCAGTTCAAG-TCTTGGTTCCATCCAAGCAGCAGCGGCTTTTCCA
1 CAAACTCGTTTCCACACGAGTCAGTTCAAGCT-TTGGTTCCATCCAAG-A-CAGGGGCTTTTCCA
* * * *
5719 CAAGCCAAACTCGTTTCCACACGAGTCAATTTAGCCTTGGTTCCATCCAAGCAGCAAGGGCTTTT
63 TAAGCCAAACTCGTTTCCATACGAGTCAGTTAAGCCTTGGTTCCATCCAAGCAGCAAGGGCTTTT
*
5784 CCACTAGC
128 CCACAAGC
* * * *
5792 CAAACTCGTTTCCATC-TGAGTCAGTT-TAGCCTTGGTTCCATCCAAG-CAAGGGCTTTTCCATA
1 CAAACTCGTTTCCA-CACGAGTCAGTTCAAGCTTTGGTTCCATCCAAGACAGGGGCTTTTCCATA
** * *
5854 AGCCAAGTTCATTTCCATATGAAGTCAGT
65 AGCCAAACTCGTTTCCATACG-AGTCAGT
5883 CTTCCAAGAC
Statistics
Matches: 196, Mismatches: 27, Indels: 15
0.82 0.11 0.06
Matches are distributed among these distances:
133 29 0.15
134 6 0.03
136 17 0.09
137 41 0.21
138 17 0.09
139 86 0.44
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (135 bp):
CAAACTCGTTTCCACACGAGTCAGTTCAAGCTTTGGTTCCATCCAAGACAGGGGCTTTTCCATAA
GCCAAACTCGTTTCCATACGAGTCAGTTAAGCCTTGGTTCCATCCAAGCAGCAAGGGCTTTTCCA
CAAGC
Found at i:6096 original size:10 final size:11
Alignment explanation
Indices: 6081--6111 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
6071 ATAGTCCTTT
6081 AAAAAAAGAAA
1 AAAAAAAGAAA
6092 AAAAAAAGAAA
1 AAAAAAAGAAA
6103 AAAAAAAGA
1 AAAAAAAGA
6112 GAAATGAAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (11 bp):
AAAAAAAGAAA
Found at i:6135 original size:27 final size:25
Alignment explanation
Indices: 6081--6157 Score: 72
Period size: 27 Copynumber: 3.1 Consensus size: 25
6071 ATAGTCCTTT
6081 AAAAAAAGAA-AA-AAAAAA-GAAA
1 AAAAAAAGAAGAAGAAAAAATGAAA
6103 AAAAAAAG-AGAAATGAAAAAATGAAA
1 AAAAAAAGAAG-AA-GAAAAAATGAAA
* *
6129 ATGAAAATGAATGAAGAAAAAATGAAA
1 A-AAAAAAGAA-GAAGAAAAAATGAAA
6156 AA
1 AA
6158 GAGAGTAAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
21 1 0.02
22 8 0.18
23 2 0.05
25 6 0.14
26 5 0.11
27 18 0.41
28 3 0.07
29 1 0.02
ACGTcount: A:0.78, C:0.00, G:0.14, T:0.08
Consensus pattern (25 bp):
AAAAAAAGAAGAAGAAAAAATGAAA
Found at i:6171 original size:27 final size:27
Alignment explanation
Indices: 6084--6171 Score: 70
Period size: 27 Copynumber: 3.3 Consensus size: 27
6074 GTCCTTTAAA
* * * *
6084 AAAAGAAAAAAAAAAGAAAAAAAAAAG
1 AAAAGAAGAAAAAATGAAAAAGAAAAT
* * *
6111 AGAA-ATGAAAAAATGAAAATGAAAAT
1 AAAAGAAGAAAAAATGAAAAAGAAAAT
* * * *
6137 GAATGAAGAAAAAATGAAAAAGAGAGT
1 AAAAGAAGAAAAAATGAAAAAGAAAAT
6164 AAAAGAAG
1 AAAAGAAG
6172 TAAGGGGTTT
Statistics
Matches: 44, Mismatches: 16, Indels: 2
0.71 0.26 0.03
Matches are distributed among these distances:
26 17 0.39
27 27 0.61
ACGTcount: A:0.74, C:0.00, G:0.18, T:0.08
Consensus pattern (27 bp):
AAAAGAAGAAAAAATGAAAAAGAAAAT
Found at i:9166 original size:51 final size:50
Alignment explanation
Indices: 9111--9621 Score: 488
Period size: 51 Copynumber: 10.1 Consensus size: 50
9101 GATGCTTGGC
9111 TAAAAGATGTAACCTTTGAATAAAAGATTGAATTTTTAAGTAATT-GATAAA
1 TAAAA-ATGTAACCTTTGAATAAAAGATTGAATTTTTAAGTAATTAG-TAAA
* * ** *
9162 TAAAAATGTCATCTTTGGGTAAAAGATTGAATTTTTAGAGTGATTAGTAAA
1 TAAAAATGTAACCTTTGAATAAAAGATTGAATTTTTA-AGTAATTAGTAAA
* * * * *
9213 TAAAATTTTAAGCTTTGAATAAAAGATTGAATTTTTAAGTAATTGGTAAG
1 TAAAAATGTAACCTTTGAATAAAAGATTGAATTTTTAAGTAATTAGTAAA
* ** ** *
9263 TAAAAATGTCATGTTTGGGTAAAAGATCGAATTTTTAGAGTAATTAGTAAA
1 TAAAAATGTAACCTTTGAATAAAAGATTGAATTTTTA-AGTAATTAGTAAA
** * *
9314 TAAGGATTTAACCTTTGAATAAAAGATTGAATTTTTAAGTAATTGGTAAA
1 TAAAAATGTAACCTTTGAATAAAAGATTGAATTTTTAAGTAATTAGTAAA
* * ** *
9364 TAAAAATGTCATCTTTGGGTAAAAGATTGAATCTTTAGAGTAATTAGTAAA
1 TAAAAATGTAACCTTTGAATAAAAGATTGAATTTTTA-AGTAATTAGTAAA
* * * *
9415 TAAAGATTTAACCTTTGAATAAAAGATTTGGATTTTTAAGTAATTGGTAAA
1 TAAAAATGTAACCTTTGAATAAAAGA-TTGAATTTTTAAGTAATTAGTAAA
* *** ** * *
9466 TAAAAGTGTTGTCTTTGGGTAAAAGATTGAATCTTTAGAGTCATTAGTAAA
1 TAAAAATGTAACCTTTGAATAAAAGATTGAATTTTTA-AGTAATTAGTAAA
** * * *
9517 TAAAGCTTTAACATTTGAATAAAAGATTGAATTTTTAAGTAATTAGTAAG
1 TAAAAATGTAACCTTTGAATAAAAGATTGAATTTTTAAGTAATTAGTAAA
* * * * *
9567 T-AAAATGTCACCTTTGAATTAGAAGTTTAAACTTTTT-AGATCATTAGTAAA
1 TAAAAATGTAACCTTTGAA-TAAAAGATTGAA-TTTTTAAG-TAATTAGTAAA
9618 TAAA
1 TAAA
9622 TTGATTAGTT
Statistics
Matches: 364, Mismatches: 86, Indels: 19
0.78 0.18 0.04
Matches are distributed among these distances:
49 12 0.03
50 140 0.38
51 200 0.55
52 12 0.03
ACGTcount: A:0.41, C:0.05, G:0.16, T:0.37
Consensus pattern (50 bp):
TAAAAATGTAACCTTTGAATAAAAGATTGAATTTTTAAGTAATTAGTAAA
Found at i:9243 original size:101 final size:100
Alignment explanation
Indices: 9120--9582 Score: 703
Period size: 101 Copynumber: 4.6 Consensus size: 100
9110 CTAAAAGATG
*
9120 TAACCTTTGAATAAAAGATTGAATTTTTAAGTAATTGATAAATAAAAATGTCATCTTTGGGTAAA
1 TAACCTTTGAATAAAAGATTGAATTTTTAAGTAATTGGTAAATAAAAATGTCATCTTTGGGTAAA
* *
9185 AGATTGAATTTTTAGAGTGATTAGTAAATAAAATTT
66 AGATTGAATCTTTAGAGTAATTAGTAAATAAAA-TT
* * *
9221 TAAGCTTTGAATAAAAGATTGAATTTTTAAGTAATTGGTAAGTAAAAATGTCATGTTTGGGTAAA
1 TAACCTTTGAATAAAAGATTGAATTTTTAAGTAATTGGTAAATAAAAATGTCATCTTTGGGTAAA
* * *
9286 AGATCGAATTTTTAGAGTAATTAGTAAATAAGGATT
66 AGATTGAATCTTTAGAGTAATTAGTAAATAA-AATT
9322 TAACCTTTGAATAAAAGATTGAATTTTTAAGTAATTGGTAAATAAAAATGTCATCTTTGGGTAAA
1 TAACCTTTGAATAAAAGATTGAATTTTTAAGTAATTGGTAAATAAAAATGTCATCTTTGGGTAAA
9387 AGATTGAATCTTTAGAGTAATTAGTAAATAAAGATT
66 AGATTGAATCTTTAGAGTAATTAGTAAATAAA-ATT
* * **
9423 TAACCTTTGAATAAAAGATTTGGATTTTTAAGTAATTGGTAAATAAAAGTGTTGTCTTTGGGTAA
1 TAACCTTTGAATAAAAGA-TTGAATTTTTAAGTAATTGGTAAATAAAAATGTCATCTTTGGGTAA
* *
9488 AAGATTGAATCTTTAGAGTCATTAGTAAATAAAGCTT
65 AAGATTGAATCTTTAGAGTAATTAGTAAATAAA-ATT
* * * *
9525 TAACATTTGAATAAAAGATTGAATTTTTAAGTAATTAGTAAGT-AAAATGTCACCTTTG
1 TAACCTTTGAATAAAAGATTGAATTTTTAAGTAATTGGTAAATAAAAATGTCATCTTTG
9583 AATTAGAAGT
Statistics
Matches: 332, Mismatches: 27, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
100 11 0.03
101 226 0.68
102 95 0.29
ACGTcount: A:0.41, C:0.05, G:0.17, T:0.38
Consensus pattern (100 bp):
TAACCTTTGAATAAAAGATTGAATTTTTAAGTAATTGGTAAATAAAAATGTCATCTTTGGGTAAA
AGATTGAATCTTTAGAGTAATTAGTAAATAAAATT
Found at i:10291 original size:26 final size:26
Alignment explanation
Indices: 10262--10349 Score: 74
Period size: 26 Copynumber: 3.3 Consensus size: 26
10252 AGAAATCTAA
10262 AAAGTAAAAAGAGATTAATCAGAGTC
1 AAAGTAAAAAGAGATTAATCAGAGTC
* *
10288 AAAGTAATAGTAATCAG-TAAATCAGTTA-T-
1 AAAGTAA-A--AA-GAGATTAATCAG--AGTC
*
10317 TAAGTAAAAAGAGATTAATCAGAGTC
1 AAAGTAAAAAGAGATTAATCAGAGTC
10343 AAAGTAA
1 AAAGTAA
10350 TAGTAATCAA
Statistics
Matches: 47, Mismatches: 6, Indels: 18
0.66 0.08 0.25
Matches are distributed among these distances:
24 1 0.02
25 3 0.06
26 22 0.47
27 1 0.02
28 1 0.02
29 15 0.32
30 3 0.06
31 1 0.02
ACGTcount: A:0.52, C:0.07, G:0.17, T:0.24
Consensus pattern (26 bp):
AAAGTAAAAAGAGATTAATCAGAGTC
Found at i:10335 original size:55 final size:55
Alignment explanation
Indices: 10263--10368 Score: 203
Period size: 55 Copynumber: 1.9 Consensus size: 55
10253 GAAATCTAAA
*
10263 AAGTAAAAAGAGATTAATCAGAGTCAAAGTAATAGTAATCAGTAAATCAGTTATT
1 AAGTAAAAAGAGATTAATCAGAGTCAAAGTAATAGTAATCAATAAATCAGTTATT
10318 AAGTAAAAAGAGATTAATCAGAGTCAAAGTAATAGTAATCAATAAATCAGT
1 AAGTAAAAAGAGATTAATCAGAGTCAAAGTAATAGTAATCAATAAATCAGT
10369 AA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 50 1.00
ACGTcount: A:0.51, C:0.08, G:0.16, T:0.25
Consensus pattern (55 bp):
AAGTAAAAAGAGATTAATCAGAGTCAAAGTAATAGTAATCAATAAATCAGTTATT
Found at i:10367 original size:29 final size:29
Alignment explanation
Indices: 10278--10367 Score: 75
Period size: 29 Copynumber: 3.2 Consensus size: 29
10268 AAAAGAGATT
*
10278 AATCAGAGTCAAAGTAATAGTAATCAGTA
1 AATCAGAGTCAAAGTAATAGTAATCAATA
* * *
10307 AATCAGTTA-T-TAAGTAA-A--AA-GAGATT
1 AATCAG--AGTCAAAGTAATAGTAATCA-ATA
10333 AATCAGAGTCAAAGTAATAGTAATCAATA
1 AATCAGAGTCAAAGTAATAGTAATCAATA
10362 AATCAG
1 AATCAG
10368 TAA
Statistics
Matches: 45, Mismatches: 7, Indels: 18
0.64 0.10 0.26
Matches are distributed among these distances:
24 1 0.02
25 2 0.04
26 15 0.33
27 1 0.02
28 1 0.02
29 22 0.49
30 2 0.04
31 1 0.02
ACGTcount: A:0.50, C:0.09, G:0.16, T:0.26
Consensus pattern (29 bp):
AATCAGAGTCAAAGTAATAGTAATCAATA
Done.