Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007264.1 Corchorus capsularis cultivar CVL-1 contig07285, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12583
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37


Found at i:100 original size:25 final size:26

Alignment explanation


    Indices: 66--120  Score: 69
    Period size: 26  Copynumber: 2.2  Consensus size: 26

         56 AGTAATTAGA

                *                      
         66 TATTGATTAATCTTT-G-ATTTATATT
          1 TATTAATTAAT-TTTAGTATTTATATT

                             *        
         91 TATTAATTAATTTTAGTGTTTATATT
          1 TATTAATTAATTTTAGTATTTATATT

                
        117 TATT
          1 TATT

        121 TGTATCTATG


Statistics
Matches: 26,  Mismatches: 2, Indels: 3
        0.84            0.06        0.10

Matches are distributed among these distances:
  24    3  0.12
  25   11  0.42
  26   12  0.46

ACGTcount: A:0.29, C:0.02, G:0.07, T:0.62


Consensus pattern (26 bp):   
TATTAATTAATTTTAGTATTTATATT

Found at i:3917 original size:39 final size:39

Alignment explanation


    Indices: 3863--3937  Score: 132
    Period size: 39  Copynumber: 1.9  Consensus size: 39

       3853 GGGATTTATT

                                 *                 
       3863 TGTCTTGCTTTTTTGATAAATTGTTTAGAACTATAGGGA
          1 TGTCTTGCTTTTTTGATAAATGGTTTAGAACTATAGGGA

                   *                            
       3902 TGTCTTGTTTTTTTGATAAATGGTTTAGAACTATAG
          1 TGTCTTGCTTTTTTGATAAATGGTTTAGAACTATAG

       3938 ATTTGTAGGT


Statistics
Matches: 34,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  39   34  1.00

ACGTcount: A:0.25, C:0.07, G:0.20, T:0.48


Consensus pattern (39 bp):   
TGTCTTGCTTTTTTGATAAATGGTTTAGAACTATAGGGA
Done.