Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007267.1 Corchorus capsularis cultivar CVL-1 contig07288, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49238

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1623--1656
11
3.1
11
82
0
50
20
2
0
76
0.92
4373--4733
156
2.3
155
77
8
358
30
15
19
34
1.93
11538--11612
30
2.6
30
80
4
82
33
16
9
41
1.80
22504--22582
31
2.6
30
88
6
122
35
10
17
36
1.84
25053--25113
31
2.0
31
90
0
95
37
24
13
24
1.91
30926--30968
22
2.0
22
100
0
86
30
18
37
13
1.90
31079--31139
11
5.9
10
76
19
54
77
0
21
1
0.86
31088--31130
17
2.5
17
84
3
59
79
0
20
0
0.74
35239--35285
22
2.2
20
85
7
58
29
21
27
21
1.98
40370--40411
3
13.3
3
90
9
66
0
33
0
66
0.92
40369--40409
20
2.1
19
95
4
73
0
31
0
68
0.90
40410--40438
3
9.7
3
100
0
58
0
65
0
34
0.93
40370--40452
9
9.3
9
79
12
64
0
45
0
54
0.99
41302--41431
56
2.3
56
98
0
251
32
12
19
36
1.89
47232--47256
5
5.0
5
100
0
50
80
0
0
20
0.72
48424--48455
7
4.6
7
100
0
64
87
12
0
0
0.54

Tables:   1

The End!