genome.fa.s7268.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007268.1 Corchorus capsularis cultivar CVL-1 contig07289, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77487

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8863--8961	42	2.3	42	87	5	137	11	26	40	22	1.87
10257--10435	36	4.9	36	87	2	259	27	22	9	40	1.85
10257--10435	73	2.5	71	85	4	241	27	22	9	40	1.85
10450--10583	69	1.9	69	95	0	241	26	25	6	41	1.80
10450--10583	37	3.9	32	83	10	115	26	25	6	41	1.80
10521--10580	19	3.2	19	65	21	54	28	21	5	45	1.73
10522--10842	41	7.9	41	90	1	479	22	20	9	46	1.80
10900--11006	41	2.6	41	90	0	169	29	16	12	41	1.85
11017--11179	71	2.2	71	86	4	227	24	25	10	39	1.87
11310--11491	71	2.5	71	86	5	222	25	25	8	40	1.83
11344--11491	71	2.1	71	91	2	235	25	25	8	40	1.84
10926--11478	299	1.8	299	93	0	962	26	22	10	40	1.87
11687--11770	42	2.0	43	85	2	116	22	39	27	10	1.87
16325--16354	12	2.5	12	94	0	51	23	33	33	10	1.88
16341--16426	42	2.0	42	88	2	127	20	39	26	12	1.89
22878--22907	13	2.2	14	94	5	53	53	10	6	30	1.60
24183--24218	19	1.9	18	88	5	54	33	22	2	41	1.68
27352--27493	18	7.9	18	84	0	131	25	40	21	13	1.89
28719--28817	30	3.3	30	71	0	90	29	28	25	17	1.97
28716--28833	60	2.0	60	86	0	164	31	27	25	16	1.96
35011--35050	20	2.0	20	85	5	53	67	7	0	25	1.16
40275--40304	13	2.2	14	94	5	53	53	10	6	30	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53027--53063	18	2.0	19	89	5	58	16	40	13	29	1.86
53956--54075	54	2.2	54	87	0	177	46	16	13	23	1.82
54208--54404	61	3.2	61	81	1	207	26	23	14	34	1.94
54098--54660	58	9.5	57	79	4	410	25	23	14	35	1.93
54098--54660	116	4.8	115	78	7	459	25	23	14	35	1.93
54895--55212	159	2.0	161	87	6	468	33	15	17	33	1.91
56500--57073	156	3.7	156	84	2	717	30	14	21	33	1.94
57367--57452	28	3.1	28	84	0	73	31	18	26	23	1.97
57693--57740	23	2.1	23	84	7	62	12	35	10	41	1.77
58596--58769	93	1.9	93	91	0	285	28	27	29	14	1.96
61632--61683	21	2.5	21	81	12	54	34	17	25	23	1.96
63538--64110	155	3.7	155	81	4	654	30	15	19	34	1.93
64420--64489	28	2.5	28	79	4	79	32	20	22	24	1.97
65710--65763	21	2.7	20	82	8	56	24	16	14	44	1.85
67106--67274	88	1.9	87	83	5	216	32	14	6	46	1.70
68297--68501	35	5.9	35	87	2	223	36	18	18	26	1.94
68268--68501	70	3.3	70	88	1	317	35	18	18	27	1.94
68268--68499	105	2.2	105	85	3	297	35	18	18	27	1.94
68494--68527	16	2.1	16	88	0	50	32	8	23	35	1.86
68513--68697	35	5.3	35	88	1	273	31	21	14	32	1.93
68513--68697	70	2.6	70	95	0	325	31	21	14	32	1.93
73009--73124	42	2.8	42	84	5	128	25	37	29	7	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77408--77487	33	2.4	33	91	2	133	33	10	15	41	1.80

Tables:   1

The End!