Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007269.1 Corchorus capsularis cultivar CVL-1 contig07290, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28077

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5827--5862
15
2.6
15
83
16
51
61
0
5
33
1.19
6513--6552
16
2.4
18
76
16
50
52
35
7
5
1.51
6926--7205
109
2.5
109
90
4
420
48
2
11
38
1.51
10047--10104
22
2.6
22
91
0
89
41
12
5
41
1.64
10236--10924
22
31.8
22
68
13
227
36
16
11
36
1.84
10430--10513
43
1.9
44
85
7
118
27
19
13
40
1.88
10233--10924
44
16.0
44
70
15
295
36
16
10
35
1.84
12385--12424
16
2.4
17
87
4
64
37
12
20
30
1.89
12580--12680
53
1.9
52
89
2
157
36
26
19
16
1.93
15137--15229
31
3.1
30
80
10
93
30
15
21
33
1.94
15154--15229
31
2.4
31
84
2
98
30
14
22
32
1.94
18398--18432
13
2.7
13
95
0
61
54
0
0
45
0.99
18625--18684
25
2.5
25
89
5
88
43
0
21
35
1.53
19316--19381
31
2.1
32
86
5
91
31
15
3
50
1.59
25152--25313
22
7.3
22
77
5
119
32
9
18
38
1.84
25347--25765
22
18.9
22
70
11
185
38
9
16
35
1.81
25844--25894
19
2.6
20
90
6
86
41
11
21
25
1.87
26073--26176
23
4.6
23
84
3
113
37
9
14
38
1.79
25844--26415
22
26.7
21
69
13
231
38
10
15
35
1.82

Tables:   1

The End!