Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007270.1 Corchorus capsularis cultivar CVL-1 contig07291, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45324

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
248--274
10
2.7
10
100
0
54
37
0
33
29
1.58
490--520
2
15.5
2
100
0
62
51
0
0
48
1.00
1299--1326
1
28.0
1
100
0
56
100
0
0
0
0.00
8008--8047
12
3.2
12
93
6
71
35
17
25
22
1.95
9483--9508
10
2.6
10
100
0
52
30
7
23
38
1.83
9619--9657
12
3.6
12
74
25
50
30
15
28
25
1.96
14890--14960
22
3.2
22
86
9
83
63
5
4
26
1.35
14921--14960
12
3.5
12
75
25
50
70
5
5
20
1.26
14915--14967
13
4.2
13
73
4
54
69
3
3
22
1.20
17635--17663
2
14.5
2
100
0
58
51
0
0
48
1.00
18021--18061
20
2.0
20
95
0
73
21
46
4
26
1.72
19734--19763
2
15.0
2
100
0
60
50
0
0
50
1.00
25550--25585
19
1.9
20
88
11
58
30
0
0
69
0.89
34121--34154
17
1.9
18
88
5
52
14
0
26
58
1.36
35045--35119
27
2.7
27
78
11
73
37
21
10
30
1.87

Tables:   1

The End!