Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007277.1 Corchorus capsularis cultivar CVL-1 contig07298, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 15229
ACGTcount: A:0.31, C:0.19, G:0.18, T:0.31


Found at i:9070 original size:22 final size:22

Alignment explanation


    Indices: 9045--9097  Score: 97
    Period size: 22  Copynumber: 2.4  Consensus size: 22

       9035 ACATCTTCCT

                      *           
       9045 TTGCCTTCATTGACTTCATCAC
          1 TTGCCTTCATCGACTTCATCAC

                                  
       9067 TTGCCTTCATCGACTTCATCAC
          1 TTGCCTTCATCGACTTCATCAC

                     
       9089 TTGCCTTCA
          1 TTGCCTTCA

       9098 AGTTTTGCCT


Statistics
Matches: 30,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  22   30  1.00

ACGTcount: A:0.17, C:0.34, G:0.09, T:0.40


Consensus pattern (22 bp):   
TTGCCTTCATCGACTTCATCAC
Done.