genome.fa.s7279.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007279.1 Corchorus capsularis cultivar CVL-1 contig07300, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80617

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3--241	50	4.8	50	79	2	282	39	18	26	15	1.90
7062--7176	39	2.8	41	80	11	137	20	12	26	41	1.87
7055--7192	42	3.4	41	79	8	147	24	12	27	35	1.91
9649--9685	19	1.9	19	88	0	56	21	13	29	35	1.92
10447--11436	143	6.9	143	92	1	1472	32	19	28	19	1.96
12835--13104	26	9.6	25	69	26	136	19	14	28	37	1.90
12702--13114	58	7.2	58	93	3	615	19	13	27	39	1.90
13521--13607	45	1.9	45	97	0	165	16	16	27	40	1.89
22027--22060	11	3.2	10	84	15	50	29	2	17	50	1.61
24791--25859	247	4.3	243	77	10	862	37	17	27	18	1.93
24791--25864	296	3.6	295	83	5	1207	37	17	27	17	1.93
24791--25867	50	21.9	50	79	6	988	37	17	27	17	1.93
27104--27477	48	7.7	49	84	8	462	31	16	29	22	1.96
27104--27477	99	3.8	99	90	4	539	31	16	29	22	1.96
27104--27469	147	2.5	146	83	6	483	30	16	29	23	1.96
34792--34827	16	2.2	16	90	0	54	8	25	22	44	1.80
35297--35325	13	2.1	14	93	6	51	6	34	6	51	1.55
35523--35566	23	1.9	23	100	0	88	47	4	38	9	1.56
35782--35857	19	3.6	19	70	24	62	39	22	14	23	1.91
35799--35900	21	4.6	22	68	26	63	39	21	13	25	1.90
35782--35871	46	2.0	46	97	0	171	40	21	14	24	1.90
36137--36180	22	2.0	22	95	0	79	54	6	9	29	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37922--37963	22	1.9	22	95	0	75	40	26	0	33	1.56
39272--39454	95	1.9	96	95	1	332	48	15	15	20	1.81
41414--41449	19	1.9	18	88	5	54	33	22	2	41	1.68
49584--49638	28	1.9	29	89	10	87	49	5	12	32	1.64
51473--51511	20	1.9	21	89	5	62	58	2	15	23	1.49
55586--55621	16	2.2	16	100	0	72	25	16	16	41	1.89
59421--59454	10	3.0	12	83	16	54	26	41	26	5	1.78
63914--63959	21	2.2	21	88	0	65	32	30	30	6	1.83
78804--78841	15	2.5	15	91	0	58	21	18	15	44	1.86
80301--80329	13	2.3	13	94	5	51	48	0	0	51	1.00

Tables:   1

The End!