Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007281.1 Corchorus capsularis cultivar CVL-1 contig07302, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22247

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1321--1374
20
2.7
20
88
0
72
38
9
16
35
1.81
1356--1686
51
6.6
50
78
7
348
42
3
16
37
1.66
1348--1686
101
3.4
100
93
3
556
43
3
15
36
1.66
2367--2507
54
2.6
54
89
4
203
48
6
19
26
1.72
2789--2999
21
9.9
21
78
9
117
53
7
18
20
1.69
2802--2835
14
2.4
15
90
9
54
55
2
14
26
1.53
2809--3101
43
6.7
42
76
13
243
54
7
19
18
1.68
2757--3002
64
3.9
63
77
13
211
53
7
19
19
1.68
2809--3113
21
13.9
22
72
19
96
54
7
19
18
1.68
13964--14034
3
23.0
3
91
5
115
30
2
1
64
1.16
17907--17988
25
3.2
25
75
19
78
18
20
1
59
1.44
17900--17987
26
3.4
26
71
17
67
17
22
1
59
1.44
17956--18019
32
2.0
31
85
8
85
12
18
1
67
1.31
17988--18040
26
2.0
26
85
7
72
18
16
3
60
1.51
18066--18162
32
3.5
25
77
21
104
27
15
4
52
1.61
18100--18175
32
2.3
32
91
6
118
25
17
3
53
1.60
18211--18358
40
3.9
39
83
10
175
22
21
2
52
1.59
18311--18358
16
3.0
16
75
22
55
18
22
2
56
1.52
18300--18376
32
2.4
32
86
0
109
23
24
1
50
1.57
18364--18428
29
2.1
31
80
8
71
16
20
1
61
1.42
18491--18563
32
2.3
32
85
4
94
21
23
5
49
1.70
18541--18660
60
1.9
63
85
6
165
26
17
5
50
1.66
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20374--20438
18
3.3
18
67
29
51
23
44
24
7
1.79

Tables:   1

The End!