Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007287.1 Corchorus capsularis cultivar CVL-1 contig07308, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19115

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
141--199
19
2.9
21
73
21
61
35
18
3
42
1.67
169--200
11
2.9
11
90
0
55
43
18
0
37
1.51
141--200
22
2.9
22
76
19
65
36
18
3
41
1.67
6023--6301
49
5.7
49
89
2
380
29
15
31
23
1.95
6023--6301
100
2.8
98
85
3
373
29
15
31
23
1.95
6025--6300
149
1.9
147
89
1
426
29
14
31
23
1.95
9733--9828
33
2.8
33
80
10
97
34
14
27
23
1.94
9869--9975
47
2.3
47
81
3
126
33
18
23
24
1.97
10106--10209
15
6.4
15
69
16
55
38
2
24
34
1.70
10033--10210
51
3.6
48
82
7
203
37
5
22
34
1.78
10033--10211
49
3.6
49
80
4
187
36
5
22
35
1.78
10245--10520
39
7.3
38
78
10
271
32
17
18
30
1.95
10242--10520
113
2.5
113
94
1
479
32
17
18
30
1.95
10242--10504
74
3.5
75
80
8
268
31
18
19
30
1.96
10396--10769
136
2.8
135
86
4
508
30
16
18
34
1.93
10665--10798
38
3.5
38
94
2
223
25
18
19
36
1.94
12481--12530
14
3.7
13
81
7
64
36
16
8
40
1.77
13912--13945
8
4.1
8
85
7
50
58
14
2
23
1.50

Tables:   1

The End!