Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007289.1 Corchorus capsularis cultivar CVL-1 contig07310, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38285

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1729--1818
22
4.1
22
86
9
123
53
14
11
21
1.71
1880--2069
23
8.4
22
79
10
114
52
16
11
19
1.73
1880--2069
69
2.8
67
81
7
213
52
16
11
19
1.73
1880--2069
46
4.2
44
79
10
186
52
16
11
19
1.73
4139--4175
15
2.5
15
80
20
51
51
0
0
48
1.00
4858--4935
28
2.6
28
80
8
84
25
19
17
37
1.94
18128--18159
16
2.0
16
100
0
64
56
12
12
18
1.67
19651--19680
13
2.2
14
94
5
53
0
16
0
83
0.65
27268--27350
33
2.5
33
96
0
130
21
44
15
18
1.86
27473--27563
42
2.2
42
84
2
112
19
42
14
23
1.88
28946--28979
17
2.0
17
100
0
68
29
11
29
29
1.92
31221--31287
31
2.2
31
91
2
109
32
14
14
37
1.88
33038--33096
29
2.0
30
93
3
102
28
8
13
49
1.71
33940--34035
38
2.6
37
86
3
138
16
19
10
53
1.72
35068--35106
18
2.2
17
90
4
60
43
0
2
53
1.14

Tables:   1

The End!