Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007296.1 Corchorus capsularis cultivar CVL-1 contig07317, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32215

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
182--266
42
2.1
40
93
4
143
31
11
8
48
1.69
4670--4714
20
2.2
20
88
0
63
44
20
11
24
1.83
5321--5429
36
3.1
35
77
15
127
27
20
5
46
1.72
5335--5442
32
3.2
32
75
14
110
28
18
5
47
1.71
5314--5442
68
1.9
68
88
3
197
27
18
6
47
1.72
5413--5485
38
2.0
37
84
10
96
21
17
8
52
1.71
5618--6285
71
9.4
71
86
4
816
24
24
10
41
1.85
6283--6363
11
7.4
11
85
0
117
19
20
9
49
1.77
5446--6285
36
23.8
35
86
4
1068
24
23
10
41
1.85
6275--6363
22
4.0
22
94
0
160
19
22
10
48
1.78
6422--6540
36
3.3
36
86
5
161
26
11
12
48
1.75
11100--11127
2
14.0
2
100
0
56
50
0
0
50
1.00
11644--11692
13
3.8
13
78
8
55
42
0
4
53
1.20
11771--11801
15
2.1
15
93
0
53
29
0
6
64
1.18
12595--12632
19
2.0
19
85
10
51
34
0
0
65
0.93
13327--13628
75
4.0
75
78
4
279
37
16
13
32
1.88
13321--13603
150
1.9
149
80
3
336
37
15
14
32
1.88
14461--14491
12
2.6
12
94
0
53
0
9
3
87
0.66
24274--24350
31
2.5
31
91
0
118
31
12
20
35
1.91
28818--28916
21
4.7
19
70
21
56
21
22
8
48
1.76
28929--28962
16
2.1
16
94
0
59
14
17
8
58
1.61
29027--29093
35
2.0
34
80
11
75
16
17
4
61
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29154--29488
22
15.5
21
71
15
145
20
21
4
53
1.63
29137--29263
7
17.6
7
67
16
55
18
20
2
58
1.50
29373--29424
14
3.8
13
78
14
52
19
17
5
57
1.59
29370--29466
20
4.7
20
84
3
104
20
19
5
54
1.63

Tables:   1

The End!