Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007305.1 Corchorus capsularis cultivar CVL-1 contig07326, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61861

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39--351
38
8.2
38
93
0
473
50
6
16
26
1.70
29--341
153
2.1
152
89
2
484
50
6
16
26
1.69
227--324
19
5.2
19
68
9
83
52
7
15
25
1.68
278--338
16
3.4
16
68
23
50
52
8
11
27
1.66
424--510
32
2.7
32
92
3
138
56
4
18
20
1.59
722--760
14
2.8
14
92
0
69
56
5
17
20
1.60
3462--3530
27
2.6
27
88
0
102
31
31
5
30
1.81
3575--3719
21
6.9
21
67
6
96
23
30
8
37
1.86
3575--3720
42
3.5
42
83
3
195
23
30
8
36
1.85
4311--4366
29
1.9
29
92
0
94
41
35
3
19
1.69
5200--5597
178
2.2
178
84
3
489
35
14
15
35
1.87
20497--20544
24
1.9
26
87
8
73
68
4
16
10
1.33
21368--21527
75
2.1
76
89
3
241
14
16
11
57
1.65
21368--21525
37
4.1
38
80
4
176
14
15
12
57
1.65
21786--21858
25
2.8
26
81
10
87
39
6
2
50
1.43
21895--21959
27
2.5
26
87
7
87
43
6
3
47
1.43
21795--21970
95
1.9
93
87
2
262
35
7
4
52
1.50
22015--23106
331
3.3
331
78
10
1028
31
14
17
36
1.90
22015--23133
330
3.4
327
78
9
1177
31
14
17
36
1.89
24152--24176
13
1.9
13
100
0
50
44
8
0
48
1.32
26804--26841
16
2.3
17
86
4
51
15
13
2
68
1.32
28139--28246
33
3.3
32
83
5
119
9
28
37
24
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42515--42617
36
2.8
35
76
12
100
31
19
18
31
1.96
49162--49195
17
2.0
17
100
0
68
64
11
5
17
1.45
50646--50695
25
2.0
26
84
4
66
16
22
26
36
1.94
50868--50902
18
2.0
18
88
5
54
25
8
11
54
1.64
53239--53370
50
2.6
50
92
0
228
40
0
19
38
1.57
53864--54632
31
23.0
31
74
15
494
40
8
18
33
1.80
53871--54636
65
11.4
65
81
9
673
40
8
18
33
1.80
53861--54636
130
5.8
130
81
8
753
40
8
18
33
1.80
54341--54431
18
5.2
18
69
15
73
40
6
14
38
1.72
59788--59842
25
2.2
25
83
6
76
70
0
14
14
1.16
60136--60173
13
2.6
14
84
15
51
78
0
21
0
0.74
60136--60175
16
2.6
16
88
11
57
77
0
22
0
0.77
61336--61385
25
2.0
26
84
4
66
16
22
26
36
1.94
61471--61495
2
12.5
2
100
0
50
52
0
0
48
1.00

Tables:   1

The End!