Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007306.1 Corchorus capsularis cultivar CVL-1 contig07327, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7028
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33


Found at i:3022 original size:27 final size:27

Alignment explanation


    Indices: 2964--3042  Score: 86
    Period size: 27  Copynumber: 2.9  Consensus size: 27

       2954 AGGTGAACTT

                     *          * * * *
       2964 AAAAATGACTAAAATGCCCCCGAGTGT
          1 AAAAATGACCAAAATGCCCCTGGGCGC

                                       
       2991 AAAAATGACCAAAATGCCCCTGGGCGC
          1 AAAAATGACCAAAATGCCCCTGGGCGC

            *              *   *     
       3018 GAAAATGACCAAAATACCCTTGGGC
          1 AAAAATGACCAAAATGCCCCTGGGC

       3043 AACCCTAATG


Statistics
Matches: 44,  Mismatches: 8, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  27   44  1.00

ACGTcount: A:0.39, C:0.25, G:0.20, T:0.15


Consensus pattern (27 bp):   
AAAAATGACCAAAATGCCCCTGGGCGC
Done.