Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007311.1 Corchorus capsularis cultivar CVL-1 contig07332, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37587

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7426--7468
22
2.0
22
86
9
61
32
30
6
30
1.84
10199--10258
17
3.4
17
69
13
57
33
20
11
35
1.88
10114--10283
37
4.5
37
81
8
184
35
20
15
28
1.93
10216--10278
20
3.3
20
69
13
69
31
17
17
33
1.93
10211--10268
17
3.2
17
68
13
53
34
17
15
32
1.91
10575--10735
56
2.9
56
89
1
207
36
14
8
40
1.76
14448--14552
46
2.3
46
81
3
122
37
22
14
25
1.92
14511--15189
90
7.4
89
84
5
701
31
25
16
26
1.96
14496--15189
180
3.8
180
82
6
780
31
25
15
26
1.96
15230--15668
55
8.1
54
93
1
691
33
22
15
29
1.94
15227--15667
109
4.0
110
92
1
703
33
22
14
29
1.94
15230--15668
164
2.7
163
92
1
702
33
22
15
29
1.94
16749--16801
15
3.6
14
81
16
63
1
15
0
83
0.74
16743--16801
28
2.0
30
90
6
95
1
16
0
81
0.78
16740--16801
31
2.0
30
93
3
106
1
17
0
80
0.79
18045--18084
15
2.8
14
81
7
53
40
5
7
47
1.54
21310--21470
56
2.9
56
90
1
216
35
14
8
40
1.77
21394--21433
21
1.9
21
85
10
55
40
15
2
42
1.60
27531--27556
1
26.0
1
100
0
52
0
0
0
100
0.00
27710--27905
31
6.5
31
68
17
126
34
16
19
28
1.94
27714--27873
59
2.7
58
83
4
205
35
15
19
29
1.93
27934--28042
31
3.6
30
75
9
123
27
19
19
33
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30113--30142
2
15.5
2
93
6
53
50
0
0
50
1.00
34053--34088
2
18.0
2
100
0
72
50
0
0
50
1.00
34941--34970
2
15.0
2
100
0
60
50
0
0
50
1.00
37190--37227
17
2.2
18
85
4
51
7
7
2
81
0.96

Tables:   1

The End!