Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007312.1 Corchorus capsularis cultivar CVL-1 contig07333, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39869

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2--37
2
18.0
2
100
0
72
50
0
0
50
1.00
266--328
30
2.1
30
93
0
108
12
6
20
60
1.54
1154--1217
26
2.4
26
89
2
92
48
4
12
34
1.62
1235--1356
56
2.3
54
83
7
151
32
12
9
45
1.75
1399--1475
30
2.3
35
78
14
92
45
16
7
29
1.76
4114--4145
2
17.0
2
87
12
50
46
0
0
53
1.00
4924--4997
21
3.3
21
66
20
60
28
17
12
41
1.85
4911--5004
46
2.0
46
100
0
188
30
20
12
36
1.90
15264--15314
3
17.0
3
100
0
102
33
0
0
66
0.92
15470--15709
80
3.0
80
85
8
282
44
18
2
34
1.63
15488--15724
78
3.0
77
87
7
293
43
18
2
35
1.65
16199--16235
19
1.9
19
88
0
56
54
8
0
37
1.30
16487--17324
442
1.9
439
82
2
1043
42
16
14
26
1.87
20459--20524
25
2.6
25
87
0
87
21
22
25
30
1.99
24478--24508
9
3.6
9
91
8
55
0
9
0
90
0.46
32903--32927
13
1.9
13
100
0
50
32
8
20
40
1.81
37419--37476
22
2.6
22
83
8
73
32
15
17
34
1.91
37568--37612
22
2.0
22
83
8
56
37
11
15
35
1.83
37583--37648
34
1.9
34
87
6
98
36
12
22
28
1.90
37616--37740
22
5.7
22
75
6
101
36
7
17
38
1.78
37648--37740
45
2.1
43
80
9
107
37
5
15
41
1.69
37846--37908
22
2.8
22
82
2
72
36
11
17
34
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37986--38035
22
2.3
22
85
0
64
40
6
16
38
1.73
38132--38256
22
5.7
22
71
7
110
40
8
16
34
1.78
38140--38256
44
2.6
45
81
2
139
41
8
16
33
1.78
38241--38338
23
4.8
20
78
15
80
35
6
16
41
1.73
38261--38341
23
3.7
23
82
9
82
37
6
13
43
1.69
38256--38392
22
6.3
22
70
12
77
35
8
15
40
1.78
38460--38597
22
6.3
22
70
6
73
35
6
15
42
1.74

Tables:   1

The End!