Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007313.1 Corchorus capsularis cultivar CVL-1 contig07334, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29652

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3676--3791
25
4.6
25
94
2
198
19
25
25
29
1.99
5409--5462
22
2.7
20
88
8
74
37
5
1
55
1.34
5428--5462
5
7.0
5
87
12
54
40
2
0
57
1.14
5409--5462
16
3.4
16
78
19
60
37
5
1
55
1.34
5436--5463
14
2.0
14
100
0
56
42
0
0
57
0.99
7925--8398
124
3.8
124
88
1
673
24
24
25
25
2.00
7961--8456
248
2.0
246
81
4
550
25
23
25
25
2.00
8336--8680
137
2.5
136
84
1
447
23
22
28
25
1.99
8336--8735
137
2.9
137
81
0
415
23
22
28
25
1.99
10133--10157
2
12.5
2
100
0
50
48
0
0
52
1.00
10223--10323
44
2.3
44
84
0
121
40
11
6
40
1.69
10304--10360
24
2.5
24
80
5
64
28
21
3
47
1.67
10380--10523
44
3.2
44
77
8
123
40
14
11
33
1.81
10754--10794
21
2.0
21
85
9
57
31
14
12
41
1.83
10243--10886
22
29.8
22
65
16
111
36
15
9
39
1.79
10850--10916
35
1.9
35
84
0
89
34
13
11
40
1.81
10909--11000
22
4.0
23
80
17
93
38
15
8
38
1.78
15496--15532
19
2.0
18
89
5
56
40
5
21
32
1.76
28996--29032
17
2.1
18
95
5
67
27
35
10
27
1.90

Tables:   1

The End!