Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007314.1 Corchorus capsularis cultivar CVL-1 contig07335, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12199

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
869--902
14
2.4
14
95
0
59
44
0
23
32
1.54
869--972
24
4.6
24
75
9
87
41
3
24
30
1.73
869--974
8
14.0
8
66
11
62
42
3
23
30
1.72
941--1085
58
2.5
57
91
4
220
42
9
21
26
1.84
1016--1185
80
2.1
81
88
1
261
42
9
20
27
1.82
1137--1475
8
45.9
8
69
20
126
44
2
23
29
1.65
1191--1480
22
13.5
21
73
18
126
43
2
23
30
1.67
1136--1480
14
24.5
14
72
18
179
44
2
22
29
1.65
2177--2585
49
8.3
49
86
2
489
23
29
14
32
1.94
2185--2585
149
2.7
146
83
4
500
23
29
14
31
1.94
2176--2584
198
2.1
196
85
2
543
22
29
14
32
1.94
5879--6062
95
1.9
96
87
5
275
38
10
19
32
1.85
6061--6089
14
2.0
15
93
6
51
72
0
20
6
1.07
7162--7437
39
7.3
39
74
10
221
31
19
17
31
1.95
7162--7440
113
2.5
113
91
1
434
31
20
17
31
1.95
7466--7574
34
3.2
33
88
8
157
33
22
3
40
1.71
7472--7565
15
5.7
15
73
18
80
34
23
2
40
1.67
7545--7588
23
1.9
23
90
0
70
34
22
2
40
1.67
7596--7743
48
3.1
47
90
4
217
20
29
16
33
1.95
7857--7947
28
3.0
31
70
23
93
27
29
13
29
1.94
7976--8183
102
2.0
103
84
7
271
26
26
12
33
1.93
8117--8226
33
3.2
33
75
13
105
30
25
12
31
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8191--8333
28
5.0
28
69
20
107
27
26
14
31
1.95
8191--8344
61
2.6
60
82
8
192
26
25
13
33
1.93
8618--8689
27
2.7
27
82
12
94
18
15
27
38
1.90
11741--12191
49
9.3
48
88
4
647
23
28
13
33
1.94
11732--12199
194
2.4
193
89
2
697
23
29
13
33
1.94

Tables:   1

The End!