Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007317.1 Corchorus capsularis cultivar CVL-1 contig07338, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21445

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
753--815
33
1.9
33
87
3
92
33
15
22
28
1.95
863--887
13
1.9
13
100
0
50
48
8
0
44
1.32
2001--2135
71
1.9
70
85
8
184
23
15
15
45
1.85
4863--4956
48
1.9
49
91
2
154
26
31
13
27
1.94
13338--13376
21
1.9
20
84
5
51
33
12
12
41
1.82
14422--14450
14
2.1
14
100
0
58
13
6
24
55
1.63
18353--18382
2
15.0
2
100
0
60
50
0
0
50
1.00
19369--19460
29
3.2
29
74
13
82
41
29
13
16
1.86
19407--19467
29
2.1
29
84
0
77
49
24
9
16
1.76
19565--19597
1
33.0
1
100
0
66
100
0
0
0
0.00

Tables:   1

The End!