Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007318.1 Corchorus capsularis cultivar CVL-1 contig07339, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21829

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--2810
928
3.0
928
94
1
4877
28
15
21
33
1.95
3082--3116
9
3.9
9
88
0
52
82
2
0
14
0.77
4602--4674
33
2.2
33
85
0
92
28
9
15
46
1.77
4651--4732
33
2.5
34
84
11
100
28
9
21
40
1.85
4725--4831
33
3.2
33
89
0
169
27
9
16
46
1.78
5174--5232
30
2.0
30
86
6
84
30
16
28
23
1.97
5722--5781
29
2.1
29
93
0
102
18
26
13
41
1.87
7870--7946
33
2.3
33
79
0
82
22
7
23
46
1.77
7890--7977
33
2.7
32
81
11
90
28
9
20
42
1.82
9451--9479
10
2.9
10
100
0
58
79
0
0
20
0.74
10937--11041
33
3.2
33
80
0
120
22
9
22
44
1.82
10990--11061
33
2.2
33
85
5
92
29
8
22
40
1.83
11057--11172
33
3.6
32
81
5
128
33
9
16
40
1.81
11083--11172
30
2.9
30
79
11
92
33
8
16
41
1.80
11551--11609
30
2.0
30
86
6
84
30
16
28
23
1.97
14576--14677
31
3.2
33
80
6
120
24
8
20
46
1.79
14703--14811
33
3.3
33
91
5
184
25
11
16
45
1.81
15154--15212
30
2.0
30
86
6
84
33
16
27
22
1.95
16246--18722
927
2.7
924
93
1
4222
28
15
21
34
1.94
17883--19561
839
2.0
839
95
0
3056
28
15
20
34
1.94
18722--21829
927
3.4
927
94
0
5382
28
15
21
34
1.94

Tables:   1

The End!