Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000732.1 Corchorus capsularis cultivar CVL-1 contig00732, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6466
ACGTcount: A:0.33, C:0.18, G:0.15, T:0.34


Found at i:500 original size:2 final size:2

Alignment explanation


    Indices: 493--518  Score: 52
    Period size: 2  Copynumber: 13.0  Consensus size: 2

        483 TTAACGGATC

                                                  
        493 AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT

        519 TAAATTAAAC


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   24  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Found at i:3645 original size:31 final size:31

Alignment explanation


    Indices: 3604--3672  Score: 93
    Period size: 31  Copynumber: 2.2  Consensus size: 31

       3594 AGTTTTGAGA

                        *                  
       3604 AACTTTTGAAACGCCTATTATACCCTTATTT
          1 AACTTTTGAAACACCTATTATACCCTTATTT

              *        *          * *      
       3635 AATTTTTGAAATACCTATTATATCTTTATTT
          1 AACTTTTGAAACACCTATTATACCCTTATTT

                   
       3666 AACTTTT
          1 AACTTTT

       3673 ATAGTTTTTT


Statistics
Matches: 32,  Mismatches: 6, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  31   32  1.00

ACGTcount: A:0.30, C:0.16, G:0.04, T:0.49


Consensus pattern (31 bp):   
AACTTTTGAAACACCTATTATACCCTTATTT
Done.