genome.fa.s7320.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007320.1 Corchorus capsularis cultivar CVL-1 contig07341, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26038

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2742--3268	55	9.6	55	95	0	919	49	7	18	24	1.72
3583--3792	22	9.3	22	72	16	121	54	7	19	18	1.67
3584--3770	66	2.7	64	75	16	151	54	7	19	18	1.67
3658--3713	15	3.9	15	69	9	53	57	5	19	17	1.59
3545--3770	44	5.0	44	71	17	135	54	7	19	18	1.67
12044--12131	29	3.1	29	85	6	126	17	13	27	42	1.86
12383--12413	16	1.9	16	93	0	53	32	9	9	48	1.69
14988--15149	51	3.2	51	95	1	281	39	4	15	40	1.69
15885--16071	38	4.8	38	86	2	257	52	5	16	25	1.65
16127--16213	32	2.7	32	89	3	120	56	4	18	20	1.59
16411--16456	14	3.4	14	93	3	76	50	8	19	21	1.75
16506--16674	42	4.0	42	77	11	159	45	3	25	25	1.69
16573--16621	25	2.0	25	91	0	80	51	0	22	26	1.49
16599--16638	16	2.4	16	83	4	53	50	0	20	30	1.49
16644--16696	16	3.2	16	73	5	52	50	5	18	24	1.68
20485--20522	16	2.2	16	90	9	58	81	0	18	0	0.69
22248--22273	2	13.0	2	100	0	52	50	0	0	50	1.00
22266--22324	30	1.9	31	96	3	111	38	15	13	32	1.86
25058--25524	55	8.5	55	95	1	814	49	7	18	24	1.73
25058--25524	109	4.3	109	94	1	828	49	7	18	24	1.73
25058--25524	164	2.8	164	94	0	819	49	7	18	24	1.73
25474--25610	71	1.9	72	87	1	204	45	7	18	27	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25555--25616	16	3.8	15	76	17	61	48	8	17	25	1.75
25848--25942	22	4.5	22	73	15	76	53	5	18	22	1.64

Tables:   1

The End!