genome.fa.s7322.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007322.1 Corchorus capsularis cultivar CVL-1 contig07343, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74728

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4479--4592	32	3.3	33	77	17	90	28	17	7	46	1.74
4582--4794	36	6.0	36	83	2	259	25	23	8	42	1.83
4582--4793	71	3.0	71	85	2	282	25	23	8	41	1.83
4582--4790	107	2.0	107	86	0	294	26	23	9	41	1.84
4796--5045	11	23.0	11	70	10	111	20	20	9	50	1.76
4848--5031	33	5.6	33	77	10	216	19	20	9	51	1.74
4813--5028	65	3.3	65	96	0	387	18	20	10	50	1.76
5176--5298	49	2.5	49	80	6	124	24	19	5	50	1.69
9649--9683	13	2.7	13	86	0	52	22	11	8	57	1.61
13661--13736	27	2.8	26	86	6	89	44	26	11	17	1.83
14008--14611	59	10.2	59	89	2	788	26	25	12	34	1.92
19371--19425	27	2.0	27	92	0	92	60	7	20	12	1.56
24652--24690	9	4.3	9	90	0	51	53	0	2	43	1.14
26125--26160	6	5.7	6	87	12	54	63	0	0	36	0.94
26125--26199	14	5.5	14	73	20	70	60	1	4	34	1.24
26125--26194	20	3.5	20	82	9	90	60	1	4	34	1.25
26145--26213	34	2.0	34	100	0	138	55	2	8	33	1.46
27145--27173	14	2.0	15	93	6	51	13	6	3	75	1.13
30750--30774	4	6.2	4	100	0	50	76	0	0	24	0.80
31435--31459	7	3.6	7	100	0	50	0	24	0	76	0.80
32913--32967	21	2.6	21	75	13	58	14	18	9	58	1.62
40496--40532	19	2.0	18	89	5	56	29	21	8	40	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43957--44007	26	2.0	26	100	0	102	37	15	7	39	1.77
51537--51573	19	2.0	18	89	5	56	40	8	21	29	1.82
57177--57222	16	2.8	17	81	15	53	30	0	0	69	0.89
66957--67022	31	2.1	31	91	0	105	27	19	3	50	1.63
67110--67219	22	4.9	22	77	10	80	31	9	20	39	1.83
67269--67399	22	6.0	22	73	11	90	35	10	18	35	1.85
67294--67650	22	16.0	22	69	19	122	40	9	14	35	1.79
67427--67474	20	2.3	22	79	17	57	43	10	14	31	1.79
67484--67522	21	2.0	19	85	14	53	46	5	7	41	1.55
67469--67650	66	2.7	65	75	11	172	43	9	12	34	1.75
67465--67650	44	4.2	45	77	10	179	43	9	11	34	1.74
67762--67828	19	3.5	19	85	6	91	44	11	19	23	1.84
67762--68110	22	16.5	20	70	18	160	41	9	15	33	1.80
67819--68372	44	12.8	43	68	15	204	39	9	14	36	1.79
67859--68110	126	2.0	127	81	2	301	41	8	14	35	1.77
68055--68123	22	3.1	22	85	0	75	36	10	14	39	1.80
68131--68253	22	5.6	22	71	6	88	33	8	17	40	1.80
68161--68246	45	1.9	45	83	4	111	34	11	15	38	1.83
68321--68372	21	2.4	21	87	3	68	38	15	11	34	1.83
68932--68967	18	1.9	19	88	5	56	33	0	8	58	1.28
72743--72796	26	2.1	26	92	0	90	53	3	5	37	1.42
73934--73968	18	1.9	18	94	0	61	51	2	5	40	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74500--74546	24	2.0	24	95	0	85	36	21	0	42	1.53

Tables:   1

The End!