genome.fa.s7326.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007326.1 Corchorus capsularis cultivar CVL-1 contig07347, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74140

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1577--1804	114	2.0	114	98	0	438	36	21	12	28	1.90
3342--3391	25	2.0	25	88	0	73	48	10	6	36	1.61
12335--12596	130	2.0	131	88	3	395	38	8	0	52	1.37
13924--13998	37	2.0	37	97	0	141	45	10	17	26	1.81
14202--14309	55	2.0	55	100	0	216	38	9	15	36	1.80
14214--14310	30	3.4	30	65	13	87	38	10	16	35	1.83
16979--17012	2	16.5	2	93	6	59	47	2	0	50	1.16
18030--18083	16	3.3	16	82	5	72	35	37	18	9	1.83
25424--25997	75	7.9	74	82	10	697	24	33	28	12	1.92
25424--25955	142	3.7	142	90	5	754	24	33	28	13	1.93
29058--29103	21	2.1	22	88	4	67	58	28	0	13	1.35
29713--29742	9	3.3	9	90	0	51	76	10	3	10	1.12
30871--30933	29	2.2	29	85	0	81	44	12	22	20	1.85
30982--31020	3	13.0	3	100	0	78	33	0	0	66	0.92
34783--34838	16	3.5	16	72	18	53	5	10	41	42	1.62
44565--44603	15	2.4	17	87	8	55	66	5	28	0	1.12
46149--46837	156	4.4	155	82	5	795	32	14	19	33	1.92
47174--47216	17	2.5	17	85	7	52	25	27	11	34	1.91
50402--50552	72	2.1	72	89	1	230	22	19	15	42	1.89
53560--53640	29	2.8	28	86	7	108	38	14	22	24	1.92
54638--54802	41	4.2	38	71	20	117	43	3	1	52	1.27
54716--54771	15	3.4	18	72	25	61	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54818--54867	21	2.3	22	96	3	93	28	44	28	0	1.55
57023--57081	31	1.9	31	86	6	84	44	15	11	28	1.82
58966--59006	6	6.7	6	88	5	64	78	0	21	0	0.76
58966--59014	12	3.9	12	86	7	71	75	0	22	2	0.90
58967--59006	13	3.2	13	89	3	55	80	0	20	0	0.72
58964--59014	6	7.9	7	85	14	58	74	0	23	1	0.92
59867--59913	24	2.0	24	86	0	67	14	6	19	59	1.56
64384--64585	101	2.0	101	86	1	280	30	24	22	22	1.99
72453--72846	211	1.9	209	93	2	673	32	10	9	47	1.69
73032--73421	137	2.8	137	82	5	435	43	8	11	36	1.72
73706--74033	141	2.4	139	89	5	504	42	10	9	37	1.72

Tables:   1

The End!