Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007327.1 Corchorus capsularis cultivar CVL-1 contig07348, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29162

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2723--2829
35
3.0
36
94
2
198
49
11
10
28
1.71
2779--2871
45
2.1
45
91
4
152
50
8
10
30
1.67
2941--3038
11
8.7
11
79
8
81
50
11
18
20
1.77
2941--3055
22
5.1
22
77
8
90
48
11
19
20
1.79
2932--3055
33
3.6
33
82
7
124
48
11
19
20
1.79
2961--3046
11
7.6
11
82
2
100
46
10
19
23
1.81
3048--3313
36
7.6
36
78
7
262
43
10
20
25
1.83
3048--3310
105
2.5
105
85
2
339
43
10
20
25
1.83
3050--3318
70
3.8
71
84
6
302
43
10
20
25
1.83
3317--3422
36
2.9
36
91
5
162
48
7
17
26
1.74
6593--6626
9
3.8
9
96
0
59
52
20
11
14
1.73
6852--6910
22
2.7
22
86
2
84
10
18
47
23
1.79
9664--9727
22
2.9
22
83
2
83
35
10
6
46
1.64
18491--18533
8
5.6
8
78
10
54
32
0
16
51
1.45

Tables:   1

The End!