genome.fa.s7328.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01007328.1 Corchorus capsularis cultivar CVL-1 contig07349, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72670

Tables:   1   

This is table  1  of  1  ( 73 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2323--2430	33	3.3	33	85	5	139	23	41	27	7	1.81
5142--5515	48	7.6	49	84	3	459	21	29	16	32	1.96
5142--5549	97	4.2	98	82	4	459	21	28	16	33	1.95
5604--5765	63	2.6	61	79	8	175	27	25	14	32	1.95
7047--7224	90	2.0	90	100	0	356	46	21	5	26	1.74
8336--8409	12	6.5	12	74	14	68	58	25	9	6	1.54
8303--8442	44	3.2	44	94	1	235	55	25	10	7	1.61
8352--8423	24	3.2	24	70	22	82	52	29	11	6	1.62
8360--8433	20	3.5	20	73	20	78	55	28	10	5	1.56
8392--8506	32	3.5	32	73	6	113	55	25	11	7	1.61
8424--8478	12	4.7	12	73	13	51	56	25	10	7	1.59
8380--8506	67	1.9	68	90	1	202	55	25	11	7	1.63
12042--12100	29	2.0	29	86	0	82	28	11	15	44	1.82
16549--16584	18	2.0	18	100	0	72	33	11	16	38	1.84
19730--19816	26	3.2	26	71	25	90	50	5	18	25	1.69
19719--19871	55	2.8	55	92	3	254	49	5	18	26	1.70
19741--19825	26	3.2	25	67	26	66	50	5	20	23	1.69
19831--19958	34	3.7	35	70	19	106	50	5	15	28	1.67
19815--19969	71	2.2	71	92	0	256	49	5	17	27	1.69
19865--19969	34	2.9	37	69	18	112	49	6	16	27	1.70
20163--20209	24	2.0	24	86	0	67	44	4	14	36	1.65
20488--20602	25	4.3	27	75	8	103	56	6	17	20	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25584--25622	3	13.0	3	94	0	69	0	35	0	64	0.94
26643--26704	25	2.4	25	75	2	61	30	29	12	27	1.93
27386--27428	12	3.3	12	82	17	59	13	16	23	46	1.83
27386--27428	15	3.1	15	87	9	56	13	16	23	46	1.83
29707--29792	41	2.1	41	97	0	163	48	25	12	12	1.77
36381--36461	30	2.6	30	84	11	92	19	25	17	37	1.94
36403--36463	30	2.1	29	93	3	104	18	29	14	37	1.90
38146--38627	166	2.9	166	83	3	567	29	16	15	38	1.90
38805--38862	17	3.5	17	73	21	68	50	15	8	25	1.73
38797--38865	33	2.1	34	97	2	131	52	14	8	24	1.70
39790--39822	7	4.7	7	100	0	66	75	0	0	24	0.80
40128--40189	23	2.7	23	89	2	88	27	12	32	27	1.93
40404--40467	26	2.4	27	89	2	94	18	4	21	54	1.62
40538--40591	29	1.9	29	85	7	76	14	5	22	57	1.58
41234--41263	15	2.0	15	93	0	51	50	6	13	30	1.67
43460--43602	50	2.9	50	82	7	150	39	6	18	34	1.78
44370--44749	40	9.4	38	74	11	280	15	25	21	38	1.92
44393--44748	82	4.5	81	85	3	442	15	24	20	39	1.92
44786--44965	50	3.7	49	86	4	220	16	31	18	33	1.94
44786--44965	98	1.8	100	85	7	260	16	31	18	33	1.94
47131--47571	67	6.6	66	83	6	437	44	15	18	21	1.86
47131--47566	135	3.2	133	84	7	497	44	15	18	21	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47194--47565	202	1.8	201	84	6	502	45	15	18	20	1.86
50895--50930	18	2.0	18	100	0	72	55	5	22	16	1.62
53928--53958	12	2.6	12	100	0	62	9	32	41	16	1.80
53912--54005	42	2.2	42	88	0	134	8	26	42	22	1.82
59629--59685	30	1.9	30	92	7	98	19	35	17	28	1.94
60026--60132	33	3.2	33	97	0	196	44	16	11	27	1.82
60125--60227	33	3.1	33	79	10	95	44	19	7	28	1.78
62106--62166	30	2.0	30	90	0	95	19	45	6	27	1.75
68460--68530	34	2.0	36	94	5	128	38	9	16	35	1.82
68890--68917	6	4.7	6	100	0	56	71	14	0	14	1.15
69250--69301	8	6.8	8	93	2	81	75	0	11	13	1.06
69241--69301	24	2.4	26	84	13	83	75	0	11	13	1.05
70330--70386	8	7.1	8	79	0	69	26	24	1	47	1.62
70330--70395	16	4.1	16	78	0	69	27	22	3	46	1.66
70271--70395	24	5.0	24	72	16	101	28	22	4	45	1.70
70331--70441	37	2.9	37	80	9	100	26	22	2	48	1.64
70570--70910	14	23.7	14	70	17	161	28	23	4	44	1.72
70588--70692	22	4.9	22	83	6	135	29	23	4	41	1.75
70570--70865	36	8.0	36	78	8	292	28	22	4	44	1.71
70580--70797	8	30.1	8	66	22	83	27	22	4	44	1.71
70708--70891	22	8.5	22	72	17	127	28	22	3	45	1.68
70629--70924	94	3.2	91	81	11	307	28	22	4	44	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70811--70923	58	1.9	58	92	0	190	29	21	5	44	1.74
70847--70924	14	5.4	14	73	19	63	28	21	6	43	1.77
70822--70940	58	2.1	58	90	0	184	30	22	5	41	1.77
70975--71031	8	7.9	7	78	20	55	28	19	10	42	1.84
70975--71202	22	10.2	22	74	14	157	28	20	6	44	1.75
70996--71196	8	26.8	8	73	14	90	28	20	6	43	1.77
71107--71163	14	3.9	14	86	4	69	35	19	3	42	1.68

Tables:   1

The End!