Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01007345.1 Corchorus capsularis cultivar CVL-1 contig07366, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8775
ACGTcount: A:0.34, C:0.19, G:0.14, T:0.33


Found at i:8529 original size:39 final size:39

Alignment explanation


    Indices: 8462--8576  Score: 132
    Period size: 34  Copynumber: 3.1  Consensus size: 39

       8452 AGTAATCAAA

                      *   *        *                
       8462 TTGAATTTTTTTTACTCCAATTCCAATTATATATTACGGG
          1 TTGAA-TTTTATTAGTCCAATTCAAATTATATATTACGGG

                                                *  
       8502 TTGAATTTTATTAGTCCAATTCAAATTATATATTA-TGG
          1 TTGAATTTTATTAGTCCAATTCAAATTATATATTACGGG

                     *            *                
       8540 --G--TTTTCTTAGTCCAATTCTAATTATATATTACGGG
          1 TTGAATTTTATTAGTCCAATTCAAATTATATATTACGGG

              
       8575 TT
          1 TT

       8577 AAGTGGATAT


Statistics
Matches: 65,  Mismatches: 7, Indels: 9
        0.80            0.09        0.11

Matches are distributed among these distances:
  34   28  0.43
  35    2  0.03
  36    1  0.02
  38    2  0.03
  39   27  0.42
  40    5  0.08

ACGTcount: A:0.29, C:0.12, G:0.11, T:0.48


Consensus pattern (39 bp):   
TTGAATTTTATTAGTCCAATTCAAATTATATATTACGGG

Done.